snakemake-pipelines

There are 13 repositories under snakemake-pipelines topic.

giesselmann/nanopype
Snakemake pipelines for nanopore sequencing data archiving and processing
Language:Python88 7 1215
Snakemake-Profiles/lsf
Snakemake profile for running jobs on an LSF cluster
Language:Python36 4 3821
dohlee/snakemake-bismark-methyldackel
Bismark-MethylDackel DNA methylation quantification pipeline in snakemake.
Language:Python5 3 0
deepalivasoya/Snakemake-food
Language:Python4 3 01
sdtemple/isweep
Statistical inference of recent positive selection using IBD segments
Language:Python3 2 00
datasnakes/orthoevol-snakemake
A snakemake workflow for the OrthoEvol python package.
Language:Python1 3 0
ChristopheVdE/Minion-Illumina-pipeline
Language:Python0 1 40
gavinf97/thesisreal
My final thesis project work from my Biomedical Genomics MSc undertaken at NUIG, 2021. Includes Nextflow, Snakemake, Bash, Python and R scripts.
Language:Jupyter Notebook0 1 00
cnuahs/snakemake-minimal
A minimal Snakemake pipeline.
Language:Python2 0
gauravcodepro/snakemake-iterations
utility for writing the snakemake files with faster iterations.
Language:Shell
hermidalc/rna-seq-star-gex
STAR + edgeR/DESeq2/limma-voom + GSEA RNA-seq gene expression analysis workflow
Language:Python1 0
leylabmpi/alphafold_sm
Language:Python3 0
mspodda/isoworm
A Snakemake pipeline developed to quantify isoforms expression levels in large RNA-seq datasets and find poly-A sites
Language:Python