SonglingZhang

Pinned Repositories

• ArchR

  ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

  Language:R00

• cell2location

  Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)

  Language:Python00

• CellChat

  R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

  Language:R00

• CellOracle

  This is the alpha version of the CellOracle package

  Language:Python00

• miloR

  R package implementation of Milo for testing for differential abundance in KNN graphs

  Language:HTML00

• monocle2-rge-paper

  Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)

  Language:Jupyter Notebook00

• monocle3

  Language:R00

• scCRC_continuum

  Language:R00

• SCENIC

  SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.

  Language:HTML00

• scenicplus

  SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.

  Language:Jupyter Notebook00

SonglingZhang's Repositories