SouthernCD
Postdoctoral fellow at Pennsylvania State University, research interests include heterotrophic plant evolution, host plant evolution.
Kunming Institute of Botany, Chinese Academy of Sciences
Pinned Repositories
Auto-GPT
An experimental open-source attempt to make GPT-4 fully autonomous.
BIGCrawler
Crawler program for BIG databases
BioFormatTools
A small set of tools for working with biological file formats
BioSeqTools
A small tool for analyzing biological sequences
braker2_singularity
Singularity container for running braker2
EasyBadiRate
Using badirate to calculate gene families with significant expansion and contraction
genewise2_docker
GeneWise2 is an old tool for sequence comparison using dynamic programming, which is now difficult to install, a modified source code and Dockerfile are provided here
GenomeSurvey
Genomic survey using next-generation sequencing (NGS) data, this python package performs genomic analysis based on GCE, quickly draws graphs and gives statistical results.
miRNABlast
Search genome loci using the miRNA sequence
RNASeqTools
Some small tools to help with RNA seq analysis
SouthernCD's Repositories
SouthernCD/EasyBadiRate
Using badirate to calculate gene families with significant expansion and contraction
SouthernCD/genewise2_docker
GeneWise2 is an old tool for sequence comparison using dynamic programming, which is now difficult to install, a modified source code and Dockerfile are provided here
SouthernCD/miRNABlast
Search genome loci using the miRNA sequence
SouthernCD/RNASeqTools
Some small tools to help with RNA seq analysis
SouthernCD/Auto-GPT
An experimental open-source attempt to make GPT-4 fully autonomous.
SouthernCD/BIGCrawler
Crawler program for BIG databases
SouthernCD/BioFormatTools
A small set of tools for working with biological file formats
SouthernCD/BioSeqTools
A small tool for analyzing biological sequences
SouthernCD/braker2_singularity
Singularity container for running braker2
SouthernCD/GenomeSurvey
Genomic survey using next-generation sequencing (NGS) data, this python package performs genomic analysis based on GCE, quickly draws graphs and gives statistical results.
SouthernCD/gpt4free
decentralising the Ai Industry, just some language model api's...
SouthernCD/HugeP2G
Aligning a large number of protein sequences to a genome
SouthernCD/Picture
图床
SouthernCD/PubMedCrawler
SouthernCD/rRNAFinder
A python tool for identify rRNA gene in plant genome.
SouthernCD/SNPfilter
A handy little tool for filtering SNPs
SouthernCD/TaxonTools
A toolkit for analyzing Taxonomy
SouthernCD/AlphaFoldGetFeatures
Get Feature section in AlphaFold
SouthernCD/HPC
Scripts for managing HPC based on lustre and SGE (ROCKS7)
SouthernCD/biogeoloc
A python object package for storing and managing geographic information about biological samples
SouthernCD/GeoGenoPlot
A python package for plotting correlations between variants and environmental factors
SouthernCD/GWAS-and-variant-callings
SouthernCD/MutChecker
Checking if a region really has mutations from pangenome and resequence data
SouthernCD/PseudoFinder
A tool to automate the search for all pseudogenes in the genome using a homology annotation approach
SouthernCD/pyTopGO
This is a Python package for performing Gene Ontology analysis using TopGO.
SouthernCD/pyVMO
A test python toolkit for variant site analysis
SouthernCD/SeqRefFilter
SouthernCD/southerncd.github.io
Xu Yuxing's personal website
SouthernCD/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
SouthernCD/yxdef
Here's an example of a repository