Pinned Repositories
demultiplex
Demultiplexing pipeline for sequencing data
differentialabundance
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
SparkDS's Repositories
Sparktx-Data-Science/demultiplex
Demultiplexing pipeline for sequencing data
Sparktx-Data-Science/differentialabundance
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
Sparktx-Data-Science/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Sparktx-Data-Science/scrnaseq
A single-cell RNAseq pipeline for 10X genomics data