Pinned Repositories
bcl_barcode_count
tally barcodes from Illumina sequencing machines
bedops
BEDOPS: high-performance genomic feature operations
fastqc_parser
A parser for turning FastQC results into an object useful for analysis with Python
footprinting2012
DNaseI Footprinting
hotspot
Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.
hotspot2_deprecated
A faster implementation of hotspot
modwt
An efficient modwt wavelets package. This isn't the usual discrete wavelet transform found in, for example, gsl but an extended set of algorithms designed to overcome some problems with the usual discrete wavelet transform.
network-motifs
network-motifs
picard-parser
A parser for Picard output
r-utilities
A set of utilities for R
Stamatoyannopoulos Lab's Repositories
StamLab/footprinting2012
DNaseI Footprinting
StamLab/hotspot
Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.
StamLab/bcl_barcode_count
tally barcodes from Illumina sequencing machines
StamLab/modwt
An efficient modwt wavelets package. This isn't the usual discrete wavelet transform found in, for example, gsl but an extended set of algorithms designed to overcome some problems with the usual discrete wavelet transform.
StamLab/bedops
BEDOPS: high-performance genomic feature operations
StamLab/fastqc_parser
A parser for turning FastQC results into an object useful for analysis with Python
StamLab/hotspot2_deprecated
A faster implementation of hotspot
StamLab/network-motifs
network-motifs
StamLab/picard-parser
A parser for Picard output
StamLab/r-utilities
A set of utilities for R
StamLab/stampipes
This is a focused collection of makefiles and scripts for analysis on Illumina sample data.
StamLab/stampipes_test_data
Holds test data for stampipes