time consuming about permutation!
EddieLv opened this issue · 0 comments
EddieLv commented
adata_sub is about 4k cells and 25k genes,
sdm.spatialdm_global(adata_sub, n_perm = 1000, specified_ind=None, method="z-score", nproc=6) cost about 2 minutes,
however,
sdm.spatialdm_global(adata_sub, n_perm = 1000, specified_ind=None, method="permutation", nproc=6) cost about 2 hours!