StatBiomed/SpatialDM

Issues

• I keep getting error when running spatialdm_local AttributeError: 'NoneType' object has no attribute 'to_adata'

  #28 opened 9 months ago by smk5g5
  6

• Bugs discovery for single-cell level spatialDM

  #25 opened 10 months ago by HelloWorldLTY
  3

• The process of 'Spatial Clustering of Local Spots' using SpatialDE is taking an excessive amount of time. Could I have overlooked some parameters?

  #29 opened 8 months ago by ABU-TO
  0

• Code Update Request: Avoid 'np.float' Deprecation Error in melanoma.ipynb

  #20 opened a year ago by yuifu
  2

• Load 10xgenomics Visium data using scanpy

  #26 opened 10 months ago by maiskovich
  0

• Load 10xgenomics Visium data using scanpy

  #27 opened 10 months ago by maiskovich
  0

• Help with the simulations from the paper

  #22 opened a year ago by hiraksarkar
  2

• reading in h5ad file

  #23 opened a year ago by anamaria-uofg
  1

• time consuming about permutation!

  #24 opened a year ago by EddieLv
  0

• positive mask commented out + other questions

  #4 opened 2 years ago by dbdimitrov
  3

• weight_matrix with n_nearest_neighbors and n_neighbors

  #5 opened 2 years ago by wyq977
  1

• spatialdm_global does not work with a list of specified index, pair_selection_matrix would change adata

  #6 opened 2 years ago by wyq977
  1

• Supp Note 1 and Example

  #3 opened 2 years ago by wyq977
  1