huangyh09
Assistant Professor at HKU, working on computational biology & statistical machine learning
Hong Kong
Pinned Repositories
brie
BRIE: Bayesian Regression for Isoform Estimate in Single Cells
brie-tutorials
Tutorials for using BRIE
briekit
Preprocessing tool kit of BRIE project in splicing analysis
diceseq
Dynamic Isoform spliCing Estimator via sequencing data
hilearn
A small library of machine learning methods and data visualization plots
PTM-X
PTM-X: a prediction tool for Post-Translational Modification cross-talk
pyseqlib
A small python library to process sequencing data.
cardelino
Clone identification from single-cell data
cellSNP
Pileup biallelic SNPs from single-cell and bulk RNA-seq data
vireo
Demultiplexing pooled scRNA-seq data with or without genotype reference
huangyh09's Repositories
huangyh09/brie
BRIE: Bayesian Regression for Isoform Estimate in Single Cells
huangyh09/brie-tutorials
Tutorials for using BRIE
huangyh09/PTM-X
PTM-X: a prediction tool for Post-Translational Modification cross-talk
huangyh09/hilearn
A small library of machine learning methods and data visualization plots
huangyh09/briekit
Preprocessing tool kit of BRIE project in splicing analysis
huangyh09/diceseq
Dynamic Isoform spliCing Estimator via sequencing data
huangyh09/pyseqlib
A small python library to process sequencing data.
huangyh09/ViralScan
STARsolo-ViralScan: Scan viral transcripts from single-cell RNA-seq data with STARsolo
huangyh09/MSclerosisSrc
Analysis scripts and notebooks for Multiple Sclerosis project
huangyh09/bioinfo-demo
Bioinformatics demo resources
huangyh09/bisctree
huangyh09/cnv-inference
research project on single-cell dissection of medulloblastoma (brain cancer in children)
huangyh09/codingnotes
Notes for programming and systems management
huangyh09/doubletQC
Quality check of doublet detection methods in single-cell RNA-seq data
huangyh09/foundation-data-science
Repo for an HKU course: STAT1005 Foundation of Data Science
huangyh09/glmpca-py
generalized principal component analysis (GLM-PCA) implemented in python
huangyh09/huangyh09.github.io
huangyh09/limix
Linear mixed model for genomic analyses.
huangyh09/limix-plot
Plotting library for genetics.
huangyh09/nnwrapper
Some utilities and wrappers for Neural Network Models
huangyh09/rRNA-explore
Exploratory note for ribosomal RNA analysis from RNA-Seq
huangyh09/scMC
Bayesian inference of mutation correlation structure in single-cells.
huangyh09/scQTLib
single-cell quantitative trait (locus) analysis library
huangyh09/SingleCell-Workshop-2021
huangyh09/slalom
huangyh09/Spanki
Splicing analysis toolkit for RNA-SEQ
huangyh09/TensorFlow-Bayes
Examples of TensorFlow for Bayesian inference
huangyh09/vireo-manual
huangyh09/XClone
Detection of allele-specific subclonal copy number variations from single-cell transcriptomic data.
huangyh09/xcltk
Toolkit for XClone (warning: under development, not stable)