Issues
- 4
Is BRIE2 appliable in 10x Genomics scRNA data
#63 opened by cynthier - 1
UnicodeDecodeError
#62 opened by igonzals - 1
- 3
split cells into groups and run brie2
#60 opened by caochch - 1
ELBO_gain and effect size
#59 opened by seongguheo - 0
- 0
MXE chromosomecoordinates to gene_ids
#57 opened by TdzBAS - 0
p values outputfile
#56 opened by TdzBAS - 1
confused about Psi_95CI
#55 opened by QuanlongJiang - 1
- 0
some questions about psi distribution
#53 opened by TuoCai2000 - 2
Brie-count Multiprocessing using only 1 core
#52 opened by nilcam - 1
- 1
brie-quant uses all available resources
#49 opened by supermaxiste - 3
visualize sashimi plot with brie2
#50 opened by TuoCai2000 - 6
Other AS types counting, no output
#45 opened by zhaoshuoxp - 3
- 1
the output of brie-count has not .h5ad file
#46 opened by liuyu988 - 2
the errors about the brie-count
#48 opened by liuyu988 - 7
Brie-Count and Brie-Quant Errors
#44 opened by ri2gu - 4
Comparing groups of single cells
#19 opened - 2
Brie-quant input
#42 opened by gabee-chan - 1
`brie-count` fails with `KeyError '1'`
#40 opened by cartal - 6
Mode 1 and gene features
#39 opened by Lavieenrose123 - 1
- 1
- 1
Export count matrix containing isoforms
#30 opened by grimwoo - 4
UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte
#34 opened by Byronxy - 1
Modeling cell-level technical variation
#35 opened by gmstanle - 2
Error in map_data function
#25 opened by cmarti - 3
What's the difference between mouse_features.filtered.csv.gz and mouse_features.lenient.csv.gz, and which one to use?
#17 opened by gangcai - 1
brie seems to be incompatible with python3
#12 opened by RuyBlast - 1
- 3
Brie isoform expression quantification error
#8 opened by s6juncheng - 4
brie-factor utility causes error
#4 opened by linkerst - 2
ModuleNotFoundError: No module named 'utils'
#1 opened by yuifu - 0
splicing events annotations
#21 opened by jphe - 1
filter out low coverage event
#20 opened by jphe - 3
- 0
Invalid divide value in brie_MH_Heuristic
#16 opened by trevortknguyen - 1
Data Interpretation
#14 opened by JustRoomTemp - 0
'nan' output in weights.tsv
#15 opened by JustRoomTemp - 2
- 6
brie-event cannot read .gtf file
#9 opened by aarzalluz - 2
Counts in fractions.tsv
#5 opened by linkerst - 5
Cannot fetch reads in region
#7 opened by yang91 - 2
Installation failed
#6 opened by yang91 - 2
- 2