zhaoshuoxp
B.S in Biology, Ph.D in Biochemistry and Molecular Biology, Wuhan University, China. Postdoc of UCSF and Stanford School of Medicine.
Stanford
Pinned Repositories
sceptre
An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.
Converters
Format Converters: bam2bigwig, FitHiC2bigInteract/longRange, HiCPro2JuiceBox, bedGrapgh2bigwig; GTF/BAM deduplicates
Enrichment-Analysis
GWAS to Genomic region, Genomic to Genomic, Genes to Genes enrichment/overlaps analysis scripts
GetWinLoginScreenWallpapers
A shell script to get the wallpapers shown on Windows10 login screen
GWASanalytics
lncRNA
De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk
Pipelines-Wrappers
Shell wrappers for common NGS pipelines, RNAseq, ChIPseq, ATACseq, CUT&RUN/TAG, WGS, etc.
PySeq
Python scripts for downstream analysis of sequencing data
RSeqPlots
R scripts for NGS data visualization
y2ave_seqspecs
Work in progress seqspecs for Y2AVE processing for IGVF
zhaoshuoxp's Repositories
zhaoshuoxp/Pipelines-Wrappers
Shell wrappers for common NGS pipelines, RNAseq, ChIPseq, ATACseq, CUT&RUN/TAG, WGS, etc.
zhaoshuoxp/RSeqPlots
R scripts for NGS data visualization
zhaoshuoxp/lncRNA
De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk
zhaoshuoxp/Converters
Format Converters: bam2bigwig, FitHiC2bigInteract/longRange, HiCPro2JuiceBox, bedGrapgh2bigwig; GTF/BAM deduplicates
zhaoshuoxp/PySeq
Python scripts for downstream analysis of sequencing data
zhaoshuoxp/Enrichment-Analysis
GWAS to Genomic region, Genomic to Genomic, Genes to Genes enrichment/overlaps analysis scripts
zhaoshuoxp/GWASanalytics
zhaoshuoxp/GetWinLoginScreenWallpapers
A shell script to get the wallpapers shown on Windows10 login screen
zhaoshuoxp/y2ave_seqspecs
Work in progress seqspecs for Y2AVE processing for IGVF