zhaoshuoxp

zhaoshuoxp's Stars

• milospjanic/GeneCausalityTestCAD

  GeneCausalityTest for CAD (coronary artery disease) is a bash/awk/R script for defining causality of a gene for a given trait, in this case CAD, given the directionality of expression change with the increasing number of risk SNPs. Script uses CAD GWAS data (Nelson et al.) and HCASMC eQTL data for regression analysis.

  Language:Shell2

• IGVF-CRISPR/IGVF_CRISPR_Pipeline

  Developing the IGVF CRISPR Pipeline

  Language:Python11

• YTLogos/ttplot

  Tao Yan's Plot Toolkit

  Language:R112

• yhat/ggpy

  ggplot port for python

  Language:Python3.7k572

• Tianfeng-Lu/single-cell-atlas-of-fly-trachea

  single cell atlas of fly larva trachea

  Language:HTML1

• dieterich-lab/CellPlot

  R package for the integrated visualisation of functional enrichment and expression data.

  Language:R82

• haowenz/chromap

  Fast alignment and preprocessing of chromatin profiles

  Language:C++19221

• MikeDacre/dbSNP

  A python interface to a dbSNP database, uses SQLAlchemy

  Language:Python1

• AllanCameron/geomtextpath

  Create curved text paths in ggplot2

  Language:R62725

• sahirbhatnagar/manhattanly

  Language:R6017

• NicolasH2/gggsea

  GSEA plots in ggplot2

  Language:R84

• yanlinlin82/ggvenn

  Venn Diagram by ggplot2, with really easy-to-use API.

  Language:R16825

• genetics-statistics/GEMMA

  Genome-wide Efficient Mixed Model Association

  Language:C++334126

• satijalab/seurat

  R toolkit for single cell genomics

  Language:R2.3k919

• milospjanic/HCASMCeQTLviewer

  HCASMCeQTLviewer is a combined bash/R/awk script to view eQTL box/dot plots for a specific gene/SNP cis and trans eQTL association in human coronary artery smooth muscle cells, one of the crucial cell types that are involved in atherosclerotic process of the blood vessel.

  Language:Shell11

• gnachman/iTerm2

  iTerm2 is a terminal emulator for Mac OS X that does amazing things.

  Language:Objective-C15.4k1.2k

• 996icu/996.ICU

  Repo for counting stars and contributing. Press F to pay respect to glorious developers.

  270k21.1k

• TheFraserLab/enrich_pvalues

  Compare one dataset to another at a variety of p-value cutoffs to pick the best p-value

  Language:Python2

• TheFraserLab/Hornet

  Simple tools for unbiased allele-specific read mapping based on WASP by the Pritchard lab

  Language:Python63

• milospjanic/ChIPSeqCompare

  ChIPSeqCompare is a combined bash/R script that compares two ChIPSeq data sets, calculates overlapping regions and provides distributions of normalized fold change for overlapping binding sites. It outputs a normalized fold change correlation plot indicating either synergistic or antagonistic binding of two factors, or absence of interaction.

  Language:Shell21

• TheFraserLab/cisVar

  cisVar scripts.

  Language:Python6

• nservant/HiC-Pro

  HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

  Language:Python387181