huangyh09/brie

ModuleNotFoundError: No module named 'utils'

yuifu opened this issue · 2 comments

yuifu commented

I had an error when I test brie.

How can I install and use BRIE?

  • python 3.6.0 (docker/python:3.6.0)
$ brie
Traceback (most recent call last):
  File "/usr/local/bin/brie", line 11, in <module>
    load_entry_point('brie==0.1.1', 'console_scripts', 'brie')()
  File "/usr/local/lib/python3.6/site-packages/pkg_resources/__init__.py", line 565, in load_entry_point
    return get_distribution(dist).load_entry_point(group, name)
  File "/usr/local/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2631, in load_entry_point
    return ep.load()
  File "/usr/local/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2291, in load
    return self.resolve()
  File "/usr/local/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2297, in resolve
    module = __import__(self.module_name, fromlist=['__name__'], level=0)
  File "/usr/local/lib/python3.6/site-packages/brie/brie.py", line 13, in <module>
    from utils.gtf_utils import loadgene
ModuleNotFoundError: No module named 'utils'

Thanks for using BRIE.

The issue comes from the compatibility with Python3. Current version only supports Python2. A new version with fully supporting Python3 will be released soon.

Yuanhua

Now the new version v0.1.2 has been released with fully supporting Python3, which is available on both GitHub and pypi. See what is new:
https://brie-rna.sourceforge.io/release.html#release-v0-1-2-13-01-2017

Any debugging test is welcome.

Thanks for using BRIE.
Yuanhua