UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte
Byronxy opened this issue · 4 comments
Byronxy commented
huangyh09 commented
Hi, thanks for the testing. BRIE2 takes a list of sam files in the -S
option instead of each sam file.
Please follow the quick start example: https://brie.readthedocs.io/en/latest/quick_start.html or the the new demo file: https://github.com/huangyh09/brie/blob/master/examples/brie2_demo.sh
Also, please upgrade to v2.0.2 from github
pip install -U git+https://github.com/huangyh09/brie
Let us know if it resolves your issue.
Yuanhua
Byronxy commented
huangyh09 commented
Good. It looks you only have three cells, and all genes are filtered out, as by default --minCell=30
, namely only genes having >= 30 cells with unique reads are kept. You could set --minCell=0
.
Byronxy commented