cartal
I'm a clinician turned computational biologist. Professor of single-cell biology at Würzburg Institute for Systems Immunology. Nicaraguan
Julius-Maximilian-Universität WürzburgWürzburg, Germany
Pinned Repositories
10xcellranger
RNAseq pipeline for 10X protocol
bioconductor-sc3-scripts
Wrapper scripts for the SC3 R package
bustools_mapping_workflow
Repository for the mapping of single cell data using `bustools`
cartal.github.io
Build a Jekyll blog in minutes, without touching the command line.
galaxy-sc3-wrappers
Galaxy wrappers scripts for SC3
HCA_Heart
This is the official repository for the Human Cell Atlas Heart project.
IFNARKO_microglia_ECM
Files from the analysis of WT and KO transcriptomes from purified microglia in C57Bl6 mice
lisbon_single_cell_2021
Repository for the notebooks used in the Single Cell workshop for the Lisbon Summer School 2021
scBRIE2
Repository for scRNA-Seq splice variant detection mapping using STARsolo and BRIE2
spleen_vs_blood_microarray
Analysis of microarray expression data for Malaria
cartal's Repositories
cartal/HCA_Heart
This is the official repository for the Human Cell Atlas Heart project.
cartal/scBRIE2
Repository for scRNA-Seq splice variant detection mapping using STARsolo and BRIE2
cartal/lisbon_single_cell_2021
Repository for the notebooks used in the Single Cell workshop for the Lisbon Summer School 2021
cartal/10xcellranger
RNAseq pipeline for 10X protocol
cartal/bioconductor-sc3-scripts
Wrapper scripts for the SC3 R package
cartal/bustools_mapping_workflow
Repository for the mapping of single cell data using `bustools`
cartal/cartal.github.io
Build a Jekyll blog in minutes, without touching the command line.
cartal/galaxy-sc3-wrappers
Galaxy wrappers scripts for SC3
cartal/IFNARKO_microglia_ECM
Files from the analysis of WT and KO transcriptomes from purified microglia in C57Bl6 mice
cartal/spleen_vs_blood_microarray
Analysis of microarray expression data for Malaria
cartal/cellstates
Finding gene expression states in scRNA-seq data
cartal/DP_GP_cluster
cartal/MDA_hepatocytes
cartal/multiOmic_benchmark
Comparison of multi-omic integration methods for single-cell data.
cartal/sc-tertiary-file-format-specs
A place to store and version specifications for file formats associated with downstream single-cell analysis
cartal/scATAC_prep
A not-too-orderly collection of scripts for preprocessing and dimensionality reduction of scATAC-seq data
cartal/scGen
cartal/scjp
this is package to assist python based single-cell analysis
cartal/scVI
Deep generative modeling for single-cell transcriptomics
cartal/scvi-tutorials
Notebooks used in scvi-tools tutorials
cartal/statistical-rethinking
Solutions for the practice problems
cartal/Symphony
Symphony algorithm for inference of cell type specific gene regulatory networks from scRNA-seq and ATAC-seq
cartal/talaveralopezlab.github.io
cartal/tci_analyses
Scripts used for the Trypanosoma cruzi TcI population genomics study
cartal/trVAE
Conditional Out-of-Sample prediction
cartal/velocyto.py
RNA velocity estimation in Python
cartal/viral-mutation
A from frmom Brian Hie's Language modeling of viral evolution