Pinned Repositories
Single_cell_WDLworkflows
analysis-wdls
Early stages of converting genome/analysis-workflows from CWL to WDL
analysis-workflows
Open workflow definitions for genomic analysis from MGI at WUSM.
Downstream_analysis_GATK
Downstream analysis of GATK pipeline
GATK_pipeline
A novice attempt at GATK pipeline for running on non-model organisms
methylation_analysis
MU-PseUDeep
Deep learning method for Pseudouridine site prediction
nf-LO
A Nextflow workflow to generate lift over files for any pair of genomes
Single_cell_WDLworkflows
for dockstore
smk5g5's Repositories
smk5g5/MU-PseUDeep
Deep learning method for Pseudouridine site prediction
smk5g5/GATK_pipeline
A novice attempt at GATK pipeline for running on non-model organisms
smk5g5/nf-LO
A Nextflow workflow to generate lift over files for any pair of genomes
smk5g5/analysis-wdls
Early stages of converting genome/analysis-workflows from CWL to WDL
smk5g5/analysis-workflows
Open workflow definitions for genomic analysis from MGI at WUSM.
smk5g5/cagt
Automatically exported from code.google.com/p/cagt
smk5g5/checkstranded
smk5g5/Complete-Python-3-Bootcamp
Course Files for Complete Python 3 Bootcamp Course on Udemy
smk5g5/Downstream_analysis_GATK
Downstream analysis of GATK pipeline
smk5g5/DSS
smk5g5/methylation_analysis
smk5g5/Single_cell_WDLworkflows
for dockstore
smk5g5/fastqc_workflow
smk5g5/graphbook
Automatically exported from code.google.com/p/graphbook
smk5g5/krueger
Closed - Moved to new repo
smk5g5/multi_pathway_enrichment_in_autism
pairwise enrichment of autism gene in pathway/s
smk5g5/MusiteDeep
MusiteDeep provides a deep-learning method for general and kinase-specific phosphorylation site prediction. It is implemented by deep learning library Keras and Theano backend (the Keras2.0 and Tensorflow backend were also provided under folder MusiteDeep_Keras2.0). At present, MusiteDeep only provides prediction of human phosphorylation sites; however, it also provides customized model training that enables users to train other PTM prediction models by using their own training data sets based on either CPU or GPU.
smk5g5/project_rna-seq
a novice effort at an rna-seq bioinformatics pipeline
smk5g5/smk5g5
smk5g5/Soybean-Workflow
smk5g5/summary_workflow
summarize GATK results including bam files (mapping rates etc),vcf summary (using vcftools) and depth of coverage using GATK.
smk5g5/Timothy_RNAseq_analysis