Pinned Repositories
3DChromatin_ReplicateQC
Software to compute reproducibility and quality scores for Hi-C data
genomedisco
Software for comparing contact maps from HiC, CaptureC and other 3D genome data.
HiC-spector
Spectral and reproducibility analysis of Hi-C contact maps
HiC_tools
A collection of tools for Hi-C data analysis
HiChIP_peaks
A tool to analyse HiChIP data
HiCPlotter
“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
hicrep
R package to evaluate the reproducibility of Hi-C data
hifive
Tools for handling HiC and 5C data
HTGTSrep
The computational pipeline and some relevant tools of LAM-HTGTS-Rep-SHM-Seq
TADbit
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
StayHungryStayFool's Repositories
StayHungryStayFool/TADbit
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
StayHungryStayFool/HiChIP_peaks
A tool to analyse HiChIP data
StayHungryStayFool/HTGTSrep
The computational pipeline and some relevant tools of LAM-HTGTS-Rep-SHM-Seq
StayHungryStayFool/HiC_tools
A collection of tools for Hi-C data analysis
StayHungryStayFool/hicrep
R package to evaluate the reproducibility of Hi-C data
StayHungryStayFool/HiC-spector
Spectral and reproducibility analysis of Hi-C contact maps
StayHungryStayFool/3DChromatin_ReplicateQC
Software to compute reproducibility and quality scores for Hi-C data
StayHungryStayFool/hifive
Tools for handling HiC and 5C data
StayHungryStayFool/genomedisco
Software for comparing contact maps from HiC, CaptureC and other 3D genome data.
StayHungryStayFool/HiCPlotter
“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau