burst_detection
Burst detection:
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Cotterill, Ellese, et al. "A comparison of computational methods for detecting bursts in neuronal spike trains and their application to human stem cell-derived neuronal networks." Journal of neurophysiology 116.2 (2016): 306-321. Link: https://www.physiology.org/doi/full/10.1152/jn.00093.2016
- R Code: https://github.com/ellesec/burstanalysis
- burstHSMM: http://www2.stat.duke.edu/~st118/Software/burstHSMM/
- Additional, book chapter by Cotterill/Eglen on Burst detection: https://arxiv.org/pdf/1802.01287.pdf
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Check also this: https://github.com/Leo-GG/NeuroFun :
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And this: https://github.com/Timothysit/mecp2
other parameters
- LvR. Paper: Shinomoto, Shigeru, et al. "Relating neuronal firing patterns to functional differentiation of cerebral cortex." PLoS computational biology 5.7 (2009): e1000433. https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1000433