Steven-N-Hart

Mayo ClinicRochester, MN

Pinned Repositories

best-practice-code-templates
Language:Shell2 4 01
bior_annotate
Super awesome annotation pipeline
Language:Shell45
BRCA-ML
Prediction of the functional impact of missense variants in BRCA1 and BRCA2 with BRCA-ML
2 2 01
dicom_wsi
Converts whole slide images to DICOM format
Language:Python17 2 88
DigiPath_MLTK
Language:Python10
P-CEAD
Language:Python9 2 02
VariantDB_Challenge
Finding a scalable alternative to the VCF File for genomics analysis
Language:Perl146
vcf-miner
VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files
Language:HTML37 5 1711
VCFNodeMongo
Language:JavaScript20
WSI-Classification
Language:Python79

Steven-N-Hart's Repositories

Steven-N-Hart/vcf-miner
VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files
Language:HTML37 5 1711
Steven-N-Hart/dicom_wsi
Converts whole slide images to DICOM format
Language:Python17 2 88
Steven-N-Hart/P-CEAD
Language:Python9 2 02
Steven-N-Hart/WSI-Classification
Language:Python79
Steven-N-Hart/bior_annotate
Super awesome annotation pipeline
Language:Shell45
Steven-N-Hart/BRCA-ML
Prediction of the functional impact of missense variants in BRCA1 and BRCA2 with BRCA-ML
2 2 01
Steven-N-Hart/DigiPath_MLTK
Language:Python10
Steven-N-Hart/NVM
This repository contains all the code and data to regenerate results from our Genetics In Medicine Paper: "Comprehensive annotation of BRCA1 and BRCA2 missense variants by functionally validated sequence-based computational prediction models"
Language:HTML1 2 02
Steven-N-Hart/OneShotBiliary
Language:Python11
Steven-N-Hart/CAVA
Language:Python4
Steven-N-Hart/Cytomine_GetAnnotation
Pull annotations and the corrosponding image patches from a Cytomine server.
Language:Python
Steven-N-Hart/DashApp
Language:Python
Steven-N-Hart/falsecolor
FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytoplasmic stain) to the traditional H&E histopathology color space.
Language:Jupyter Notebook0 0
Steven-N-Hart/GANanomalyDetection
Language:Python
Steven-N-Hart/Ganomaly
Language:Python
Steven-N-Hart/General-ImageClassifier
Language:Python2 01
Steven-N-Hart/General-OneShot
Language:Python3 01
Steven-N-Hart/hap.py
Haplotype VCF comparison tools
Language:C++
Steven-N-Hart/interop
General discussion of topics related to interoperability
Language:HTML1 0
Steven-N-Hart/MayomicsVC
Variant Calling Pipeline in Cromwell/WDL
Language:wdl
Steven-N-Hart/MutalyzerToVCF
Language:Python
Steven-N-Hart/openslide-docker
This repo contains the installation procedures for an openslide environment on ubuntu
2
Steven-N-Hart/POC-GEN
Repo for working on dockerfiles for ONT software
Language:Dockerfile1 0
Steven-N-Hart/Re-stained_WSIs_Registration
Re-stained whole slide image alignment
Steven-N-Hart/SaffronFogger
Language:C2 0
Steven-N-Hart/Segmentation_2_TFRrecords
Language:Python2 0
Steven-N-Hart/SpliceAI
A deep learning-based tool to identify splice variants
Steven-N-Hart/tcga-breast
Not for public consumption yet
Language:Python3 01
Steven-N-Hart/vcf2gVCF
Language:Python
Steven-N-Hart/wsi-sampler
Code to find coordinates in WSI that have tissue.
Language:HTML3 01