SSACSolver does not simulate custom propensities correctly

Question

SSACSolver does not simulate custom propensities correctly

Closed this issue 2 years ago · 1 comments

C++ code to look at species that are dependencies of a reaction does not inspect a custom propensity string, then does not update reaction propensity when dependent species changes

Answer 1 · 2023-03-02T18:37:03.000Z

This model shows the issue.

https://github.com/StochSS/GillesPy2/blob/main/examples/Models/Extra_Models/Genetic_Toggle_Switch.ipynb

Compare NumPySSASolver vs SSACSolver outptut.