StochSS/GillesPy2

Issues

• Pylint checker fails on forked repos

  #957 opened 4 months ago by briandrawert
  0

• SSACSolver freezes until pressing Ctrl+C

  #960 opened 3 months ago by maurosilber
  1

• Assignment rule variable not found when variable is a Parameter

  #945 opened 2 months ago by BryanRumsey
  1

• Event Assignment: ADD Compartment to valid variable types once implemented

  #947 opened 2 months ago by BryanRumsey
  0

• TauHybridSolver history_length needs to be configurable

  #905 opened 2 months ago by briandrawert
  0

• check python typing in template_gen.py

  #930 opened 2 months ago by seanebum
  0

• If bad value is passed to Event, throw error

  #883 opened 2 months ago by briandrawert
  0

• Coverage badge should look at 'main' branch

  #899 opened 2 months ago by briandrawert
  0

• Solver interrupts do not work correctly if run outside of main thread

  #901 opened 2 months ago by jtcooper10
  0

• Tau-Hybrid C solver: # of SSA steps after negative value should be configurable constant

  #875 opened 2 months ago by briandrawert
  0

• Need to make private, or remove methods

  #859 opened 2 months ago by briandrawert
  1

• Remove deprecated feature for v1.10.0

  #873 opened 2 months ago by BryanRumsey
  0

• http://www.stochss.org/ URL access issue

  #954 opened 2 months ago by RichardBruskiewich
  1

• variables are silently ignored by non-variable C++ solvers

  #955 opened 2 months ago by benblamey
  0

• Time scales

  #953 opened 7 months ago by chaoui-mu
  2

• Error on module.add_event([event])

  #952 opened 8 months ago by frascalise
  0

• Error encountered while running simulation C++ file (return code: 3221225785)

  #951 opened a year ago by michimiura
  2

• Assignment and Rate Rules, and Events need to be able to target Parameters

  #949 opened a year ago by briandrawert
  1

• Timespans are not correctly converted to StochSS

  #933 opened 2 years ago by BryanRumsey
  0

• Model.run needs to error if integrator is passed as arg

  #932 opened 2 years ago by BryanRumsey
  0

• SBML import fails if MathML includes reserved Python words

  #940 opened 2 years ago by leon9812
  0

• Problem installing gillespy2

  #935 opened 2 years ago by lilt3ddy
  2

• Unable to import SBM files with Dependent variables

  #936 opened 2 years ago by TorkelE
  2

• SSACSolver does not simulate custom propensities correctly

  #925 opened 2 years ago by briandrawert
  1

• Need to update the C++ dependency check to scheck for SCons instead of Make

  #923 opened 2 years ago by jtcooper10
  0

• Why does this take so long to run? Number of Reactions?

  #904 opened 2 years ago by mdip226
  1

• Unexpectedly slow simulation with zvode

  #927 opened 2 years ago by TorkelE
  3

• Notebook plot display using plotly fails

  #915 opened 2 years ago by BryanRumsey
  0

• SSACSolver simulates the telegraph model incorrectly

  #917 opened 2 years ago by briandrawert
  2

• Cleanup C++ compiler warnings

  #911 opened 2 years ago by briandrawert
  0

• In TauHybrid Python solver, savetimes vector should pop() not slice

  #912 opened 2 years ago by briandrawert
  0

• Use SCons instead of Makefiles for compilation of C++ code

  #910 opened 2 years ago by briandrawert
  0

• TauHybridSolver gives incorrect value at t=0 (not initial value)

  #898 opened 2 years ago by briandrawert
  0

• TauHybridSolver tau selection bugs break Opioid model

  #902 opened 2 years ago by briandrawert
  0

• Github docs aren't updating automatically

  #887 opened 2 years ago by BryanRumsey
  0

• TauHybridCSolver does not simulate RateRule-only model correctly

  #895 opened 2 years ago by briandrawert
  3

• TauHybridSolver does not simulate rate-rule & continuous species model correctly

  #896 opened 2 years ago by briandrawert
  0

• Bug in EventAssignment for SBML import

  #884 opened 2 years ago by vwiela
  1

• Update documentation

  #886 opened 2 years ago by BryanRumsey
  0

• Reaction.reactants should throw error if species is repeated

  #876 opened 2 years ago by briandrawert
  0

• Contradicting error message

  #880 opened 2 years ago by vwiela
  3

• Target species of RateRules must be continuous

  #897 opened 2 years ago by briandrawert
  0

• Create an pylintrc file

  #851 opened 2 years ago by BryanRumsey
  0

• Tau-hybrid Non-negative check needs to be refactored

  #874 opened 2 years ago by briandrawert
  0

• Problematic results for a simple reversible autocatalytic reaction

  #869 opened 2 years ago by PENG-Zhen
  0

• TauHybridCSolver failes on SimpleHybridModel

  #863 opened 2 years ago by briandrawert
  0

• `plot_mean_stdev` does not work for ODECSolver

  #865 opened 2 years ago by briandrawert
  1

• Syntax Warnings in integration tests

  #861 opened 2 years ago by briandrawert
  0

• Update documentation

  #856 opened 2 years ago by BryanRumsey
  0

• Integration test take in excess of 6 hours, can never complete.

  #855 opened 2 years ago by briandrawert
  2