Pinned Repositories
biobroom
Tidy up computational biology objects
edge
R package for identifying differentially expressed genes from genome-wide gene expression profiling studies.
gcatest
genotype conditional association test
lfa
logistic factor analysis
popkin
R package to estimate kinship and FST from SNP data
qvalue
R package to estimate q-values and false discovery rate quantities.
reading
A collection of papers and books that Storey Lab members should read and others may find useful
subSeq
Subsampling of high-throughput sequencing count data
superSeq
Assessing the increase in power from increasing read depth in a given RNA-Seq study
terastructure
TeraStructure is a new algorithm to fit Bayesian models of genetic variation in human populations on tera-sample-sized data sets (10^12 observed genotypes, i.e., 1M individuals at 1M SNPs). This package provides a scalable, multi-threaded C++ implementation that can be run on a single computer.
Storey Lab's Repositories
StoreyLab/qvalue
R package to estimate q-values and false discovery rate quantities.
StoreyLab/biobroom
Tidy up computational biology objects
StoreyLab/reading
A collection of papers and books that Storey Lab members should read and others may find useful
StoreyLab/terastructure
TeraStructure is a new algorithm to fit Bayesian models of genetic variation in human populations on tera-sample-sized data sets (10^12 observed genotypes, i.e., 1M individuals at 1M SNPs). This package provides a scalable, multi-threaded C++ implementation that can be run on a single computer.
StoreyLab/edge
R package for identifying differentially expressed genes from genome-wide gene expression profiling studies.
StoreyLab/popkin
R package to estimate kinship and FST from SNP data
StoreyLab/subSeq
Subsampling of high-throughput sequencing count data
StoreyLab/lfa
logistic factor analysis
StoreyLab/superSeq
Assessing the increase in power from increasing read depth in a given RNA-Seq study
StoreyLab/alstructure
An R package that implements the ALStructure algorithm for estimating the admixture model of genetic population structure
StoreyLab/bnpsd
R package to model and simulate admixed populations
StoreyLab/fFDR
Functional FDR package
StoreyLab/gcatest
genotype conditional association test
StoreyLab/gcat
This package has been renamed gcatest: https://github.com/StoreyLab/gcatest
StoreyLab/human-differentiation-manuscript
Details on the data analysis for "New kinship and F_ST estimates reveal higher levels of differentiation in the global human population" by Ochoa and Storey
StoreyLab/sparta
Dividing RNA-Seq reads based on their ancestral genotype
StoreyLab/superSeq-manuscript
StoreyLab/ALStructure-manuscript
Data and code utilized in "A likelihood-free estimator of population structure bridging admixture models and principal components analysis", by Cabreros and Storey
StoreyLab/factorial-MA-RS
Supplementary Materials for the manuscript "A nested parallel experiment demonstrates differences in intensity-dependence between RNA-seq and microarrays" by Robinson, Wang, and Storey
StoreyLab/BarNone
Match barcodes in sequencing data based on Levenshtein distance
StoreyLab/dnamix
DNAMIX is a computer program to calcluate likelihood ratios as they pertain to mixed DNA samples encountered in forensic science.
StoreyLab/eigenR2
StoreyLab/odp_general_studies
Reproducible analyses for "The optimal discovery procedure for significance analysis of general gene expression studies" by Bass and Storey
StoreyLab/qvalue-shiny
a shiny website for the q-value package.
StoreyLab/sHWE-manuscript
StoreyLab/storeylab.github.io
StoreyLab/trigger-devel