Pinned Repositories
bioconda-recipes
Conda recipes for the bioconda channel.
extract_sequence_range
A script that provides several options for extracting a range of characters from a FASTA file
GISAID_Pipeline_Functions
Scripts used to determine variants in SARS-CoV-2 Sequences from the Global Sharing of All Influenza Data (GISAID) database.
Phybrid
A hybrid gene content and k-mer feature viral metagenomic contig identifier
Prophage_in_NTM
This repository contains the data and methods for characterization of integrated prophages within different species of clinical non-tuberculous mycobacterial genomes
public
Viral_Classification_in_Metagenomics
This repository contains the data and scripts used in Simulation Study of Viral Contiguous Sequence Identification Tools
VirBrant
VirKraken
Kraken extension to identify viral contigs
wiki
How to's
Strong Lab, National Jewish Health, University of Colorado, Denver's Repositories
Strong-Lab/VirKraken
Kraken extension to identify viral contigs
Strong-Lab/Phybrid
A hybrid gene content and k-mer feature viral metagenomic contig identifier
Strong-Lab/Prophage_in_NTM
This repository contains the data and methods for characterization of integrated prophages within different species of clinical non-tuberculous mycobacterial genomes
Strong-Lab/Viral_Classification_in_Metagenomics
This repository contains the data and scripts used in Simulation Study of Viral Contiguous Sequence Identification Tools
Strong-Lab/VirBrant
Strong-Lab/bioconda-recipes
Conda recipes for the bioconda channel.
Strong-Lab/extract_sequence_range
A script that provides several options for extracting a range of characters from a FASTA file
Strong-Lab/GISAID_Pipeline_Functions
Scripts used to determine variants in SARS-CoV-2 Sequences from the Global Sharing of All Influenza Data (GISAID) database.
Strong-Lab/NTM_Soil
Strong-Lab/public
Strong-Lab/wiki
How to's