Suger0917
PhD @pku-tanglab from Peking University. Postdoc @ Chang Lab from Stanford University.
Peking University; Stanford University
Pinned Repositories
allanlab
Allan Lab website
ArchR_Shu
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
cgmaptools
toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR
inferCNV
Inferring CNV from Single-Cell RNA-Seq
ipynb-lamanno2016
Notebook and examples related to La Manno, Sten Linnarson 2016 cell: midbrain
Metastatic-Colorectal-Cancer
MTseeker
mitochondrial variant analysis tools
royal-terminal
One app to bring all your connections and bind them.
scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
velocyto.py
RNA velocity estimation in Python
Suger0917's Repositories
Suger0917/velocyto.py
RNA velocity estimation in Python
Suger0917/allanlab
Allan Lab website
Suger0917/ArchR_Shu
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
Suger0917/cgmaptools
toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR
Suger0917/inferCNV
Inferring CNV from Single-Cell RNA-Seq
Suger0917/ipynb-lamanno2016
Notebook and examples related to La Manno, Sten Linnarson 2016 cell: midbrain
Suger0917/Metastatic-Colorectal-Cancer
Suger0917/MTseeker
mitochondrial variant analysis tools
Suger0917/royal-terminal
One app to bring all your connections and bind them.
Suger0917/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
Suger0917/scanpy_usage
Scanpy use cases.
Suger0917/scenicplus
SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
Suger0917/scRNA-seq_notes
A list of scRNA-seq analysis tools
Suger0917/scvelo
Stochastic Single Cell RNA Velocity
Suger0917/umap
Uniform Manifold Approximation and Projection
Suger0917/zunderlab.github.io
Zunder Lab website