SunbyMoon

SunbyMoon's Stars

• alkodsi/ctDNAtools

  R package to work with ctDNA sequencing data

  Language:R3712

• OpenGene/scrnapip

  A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis

  Language:HTML10615

• OpenGene/fastv

  An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.

  Language:C++11224

• baoxingsong/GEAN

  This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.

  Language:C++458

• broadinstitute/catch

  A package for designing compact and comprehensive capture probe sets.

  Language:Python7916

• nate-d-olson/genomic_purity

  characterization of test material purity using whole genome sequencing data

  Language:Python12

• CGRL-QB3-UCBerkeley/denovoTargetCapturePopGen

  Bioinformatics pipelines for processing transciptome-based exon capture data in population genomic analyses

  Language:Perl77

• OpenGene/VisualMSI

  Detect and visualize microsatellite instability(MSI) from NGS data

  Language:C++3110

• Griffan/VerifyBamID

  VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

  Language:mupad9415

• mikessh/mageri

  MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers

  Language:Java216

• whuhacker/Sitedossier-Crawler

  Crawler for sitedossier.com

  Language:Python3438

• compbio-UofT/FSDA

  Language:Python42

• MultiQC/MultiQC

  Aggregate results from bioinformatics analyses across many samples into a single report.

  Language:JavaScript1.3k608

• shiquan/bamdst

  a lightweight bam file depth statistical tool

  Language:C14849

• marcelm/cutadapt

  Cutadapt removes adapter sequences from sequencing reads

  Language:Python531132

• OpenGene/awesome-bio-datasets

  awesome-bio-datasets

  22344

• biopython/biopython

  Official git repository for Biopython (originally converted from CVS)

  Language:Python4.5k1.8k

• samtools/bcftools

  This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

  Language:C691242

• biocommons/hgvs

  Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

  Language:Python25094

• mutalyzer/mutalyzer2

  HGVS variant nomenclature checker

  Language:Python9823

• scikit-bio/scikit-bio

  scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.

  Language:Python905269

• OpenGene/gencore

  Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

  Language:C++11631

• vd4mmind/mutation_analysis_scripts

  day to day activity for mutation data

  Language:Shell25

• OpenGene/slicer

  Slice a text file (like FastQ) to smaller files by lines, with gzip supported

  Language:C62

• OpenGene/defq

  Please switch to https://github.com/OpenGene/defastq

  Language:C296

• cbg-ethz/NGS-pipe

  NGS-pipe: next-generation sequencing pipelines for precision oncology

  Language:Python10952

• ossu/data-science

  📊 Path to a free self-taught education in Data Science!

  19.3k3.5k

• SunbyMoon/Bioinformatics-Programming-using-Python

  Exercises from the 'Bioinformatics Programming using Python' book by Mitchell L Model

  Language:Python1

• SunbyMoon/beginning-python-for-bioinformatics

  repository for the code featured in the blog

  Language:Python1

• google/deepvariant

  DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

  Language:Python3.3k732