This is a repository which shows a simple model of A, B,C molecules that is helpful for understanding the "don't care, don't write" capacity of rule based modelling.
Click on the link to:
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See the models by looking at the ode or ssa simulations
ode_simple_dcdw.bngl,ssa_simple_dcdw.bngl -
Run the models and look at results using the
PyBNG.ipynb
Additional material on how BioNetGen works as well as different models can be found here: BNGTutorial