SvitlanaLukicheva

SvitlanaLukicheva's Stars

• VIB-PSB/MINI-EX

  Motif-Informed Network Inference of cell type-specific gene regulatory networks in plants

  Language:Python158

• ruanjue/wtdbg2

  Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly

  Language:C51094

• quinlan-lab/applied-computational-genomics

  Applied Computational Genomics Course at UU: Spring 2020

  Language:HTML941210

• mikolmogorov/Flye

  De novo assembler for single molecule sequencing reads using repeat graphs

  Language:C787167

• trinityrnaseq/trinityrnaseq

  Trinity RNA-Seq de novo transcriptome assembly

  Language:Perl834320

• Gaius-Augustus/BRAKER

  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

  Language:Perl36080

• enormandeau/gawn

  Genome Annotation Without Nightmares

  Language:Perl4213

• TGAC/KAT

  The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.

  Language:C++20652

• alekseyzimin/masurca

  Language:M424535

• Malfoy/BRAW

  Box of not RelAted Work

  Language:C++44

• rrwick/Bandage

  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

  Language:C++58698

• GFA-spec/GFA-spec

  Graphical Fragment Assembly (GFA) Format Specification

  Language:Makefile19842

• GenomiqueENS/toulligQC

  A post sequencing QC tool for Oxford Nanopore sequencers

  Language:JavaScript878

• wdecoster/NanoPlot

  Plotting scripts for long read sequencing data

  Language:Python43247

• bcgsc/ntCard

  Estimating k-mer coverage histogram of genomics data

  Language:C++769

• ExpressionAnalysis/ea-utils

  Automatically exported from code.google.com/p/ea-utils

  Language:C++9567

• relipmoc/skewer

  Language:C++9517

• Malfoy/BWISE

  de Bruijn Workflow using Integral information of Short pair End reads

  Language:C++132