Is it possible to use the tool on 4 samples?

[emanuelavilla]

Hello SydneyBioX lab!

I have a question about your tool! I have 4 data: scRNA WT, scATAC WT, scRNA MUT and scATAC MUT.
Would it be possible to use your tool on these 4 samples altogether? Or maybe is it better to integrate all the scRNA WT and MUT, integrate all the scATAC WT and MUT and then run your tool?

Thanks