Sydney Precision Data Science Centre

SPDSC alliance brings together multiple research groups and junior and senior researchers with shared interests in bioinformatics and computational sciences.

Sydney, Australia

Pinned Repositories

BIDCell
Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data
Language:Python37 8 266
CiteFuse
CiteFuse:
Language:R27 11 175
EMBLworkshop2018
Language:HTML0 7 00
localWorkshop
Workshop Slides and Website for Cross-validated Classification Workshop Held on 29 June 2018 in Sydney
Language:HTML1 2 01
MoleculeExperiment
Language:R12 8 80
scClassify
Hierarchical classification of cells
Language:R23 10 185
scDC
Language:R10 8 114
scJoint
Language:Jupyter Notebook57 9 1115
scMerge
Statistical approach for removing unwanted variation from multiple single-cell datasets
Language:R67 11 3613
SimBench
Language:R15 8 23

Sydney Precision Data Science Centre's Repositories

SydneyBioX/scFeatures
Language:R10 9 122
SydneyBioX/spicyR
Language:R8 5 484
SydneyBioX/ClassifyR
A framework for cross-validated classification problems, with applications to differential variability and differential distribution testing
Language:R5 1 04
SydneyBioX/spicyWorkflow
Perform spatial analysis of in situ cytometry data in R
5 9 40
SydneyBioX/Statial
Language:R5 9 61
SydneyBioX/CellSPA
Cell Segmentation Performance Assessment
Language:R4 7 51
SydneyBioX/lisaClust
Language:R3 3 101
SydneyBioX/clustSIGNAL
clustering of Spatially Informed Gene expression with Neighbourhood Adapted Learning
Language:R2 8 20
SydneyBioX/HKUST_workshop
Language:HTML11
SydneyBioX/SpatialFeatures
An R package to extract features from singcell spatial genomics
Language:R1 7 00
SydneyBioX/BenchHub
Language:R0 7 110
SydneyBioX/clustSIGNAL_workshop
Spatial transcriptomics data analysis – spatially-aware clustering with clustSIGNAL
Language:Dockerfile0 7 01
SydneyBioX/NEMoE
Regularized Mixture of Experts Model
Language:C++0 7 01
SydneyBioX/SpatialSimBench
Language:R0 7 00
SydneyBioX/SpatialUtils
Utility functions for spatial omics data
Language:R0 7 00
SydneyBioX/ABACBS2024_EMCR_Hackathon_Spatial_Biology
Repository around EMCR Hackathon at ABACBS 2024 Conference
Language:HTML
SydneyBioX/BioCAsia_2024_wSIR
Language:Dockerfile2
SydneyBioX/ChimpLipidomics
Code repository for analysis in chimp lipidomics project
SydneyBioX/ClassifyR3analytics
Analyses for best practices guide to ClassifyR multi-view modelling
Language:HTML7 0
SydneyBioX/ClassifyRPlaybook
Language:CSS
SydneyBioX/CLUEY
Language:R
SydneyBioX/MultiP_fairness
SydneyBioX/scdneySpatial_BiocAsia2024
scdney spatial workshop for ABACBS 2024
Language:Dockerfile2
SydneyBioX/SpatialDatasets
Language:R7 3
SydneyBioX/spatialPlaybook
Language:HTML
SydneyBioX/SpatialSimbench_website
Language:JavaScript
SydneyBioX/SpatialSimbenchQuartoOJS
Language:JavaScript8 0
SydneyBioX/SpatioMark
Figure Generation for SpatioMark Manuscript
Language:R
SydneyBioX/StabMap
Mosaic single cell data integration using non-overlapping features
Language:R7 0
SydneyBioX/wSIR
Weighted Sliced Inverse Regression for spatial omics data analysis
Language:R7 0