Sydney Precision Data Science Centre

SPDSC alliance brings together multiple research groups and junior and senior researchers with shared interests in bioinformatics and computational sciences.

Sydney, Australia

Pinned Repositories

BIDCell
Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data
Language:Python34 8 215
CiteFuse
CiteFuse:
Language:R26 12 165
EMBLworkshop2018
Language:HTML00
localWorkshop
Workshop Slides and Website for Cross-validated Classification Workshop Held on 29 June 2018 in Sydney
Language:HTML11
MoleculeExperiment
Language:R110
scClassify
Hierarchical classification of cells
Language:R22 10 174
scFeatures
Language:R10 9 112
scJoint
Language:Jupyter Notebook58 9 1115
scMerge
Statistical approach for removing unwanted variation from multiple single-cell datasets
Language:R65 11 3613
SimBench
Language:R14 9 23

Sydney Precision Data Science Centre's Repositories

SydneyBioX/BIDCell
Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data
Language:Python34 8 215
SydneyBioX/scClassify
Hierarchical classification of cells
Language:R22 10 174
SydneyBioX/MoleculeExperiment
Language:R110
SydneyBioX/spicyR
Language:R8 5 444
SydneyBioX/SurvBenchmark
Language:R6 8 01
SydneyBioX/scPB
Single cell perturbation benchmarking
Language:R5
SydneyBioX/spicyWorkflow
Perform spatial analysis of in situ cytometry data in R
Language:HTML4 10 2
SydneyBioX/lisaClust
Language:R3 3 51
SydneyBioX/scdney
Single cell data integrative analysis
Language:TeX3 8 17
SydneyBioX/GHIST
Language:Python20
SydneyBioX/Statial
Language:R2 10 21
SydneyBioX/ClassifyR
A framework for cross-validated classification problems, with applications to differential variability and differential distribution testing
Language:R13
SydneyBioX/simpleSeg
Language:R1 7 18
SydneyBioX/Unlocking-single-cell-spatial-omics-analyses-with-SCDNEY
International Summer Session at Fudan
Language:HTML1
SydneyBioX/Cornell_SCDNEY_2024
Language:HTML00
SydneyBioX/Diabetic-ischaemic-cardiomyopathy
Language:HTML00
SydneyBioX/ClassifyR3analytics
Analyses for best practices guide to ClassifyR multi-view modelling
Language:HTML
SydneyBioX/clustSIGNAL
clustering of Spatially Informed Gene expression with Neighbourhood Adapted Learning
Language:R9 0
SydneyBioX/Covid19_datastructure
Language:HTML
SydneyBioX/IMPACT
IMPACT: Interpretable Microbial Phenotype Analysis via microbial Characteristic Traits
SydneyBioX/MelanomaDT_2024
Single-cell sequencing of melanoma reveals cell state-dependent heterogeneity and impact of pro-inflammatory signaling in response to MAPK inhibitors.
Language:HTML
SydneyBioX/packageHeader
Headers for package vignettes
Language:HTML
SydneyBioX/sc_bench_benchmark_README
SydneyBioX/SpatialFeatures
An R package to extract features from singcell spatial genomics
Language:HTML
SydneyBioX/SpatialSimBench
Language:R
SydneyBioX/SpatialSimbenchQuartoOJS
Language:JavaScript
SydneyBioX/SpatialSimbenchQuartoR
Language:JavaScript
SydneyBioX/StabMap
Mosaic single cell data integration using non-overlapping features
Language:R8 0
SydneyBioX/SydneyBioXStickers
A repo for storing all the pretty SydneyBioX stickers.
SydneyBioX/wSIR
Weighted Sliced Inverse Regression for spatial omics data analysis
Language:R9 0