SydneyBioX/scMerge
Statistical approach for removing unwanted variation from multiple single-cell datasets
R
Issues
- 1
using scMerge2 with count matrix Seurat object
#41 opened by martina811 - 3
how to accelarate the scMerge2 process
#39 opened by xflicsu - 0
newest matrix version gives error
#40 opened by satzel - 1
Atlas level integration
#38 opened by ConDem94 - 10
Tire kicking for use in the OSCA book
#14 opened by LTLA - 1
Selecting all cells : replicate_prop = 1
#30 opened by CodeInTheSkies - 2
Using BiocSingular for SVD operations
#8 opened by kevinwang09 - 1
- 0
Error when rerun the vignette
#37 opened by QianLLLL - 1
- 0
How to set the kmeans parameters
#35 opened by YOU-k - 0
detail about ESC dataset analysis
#34 opened by wupeng2 - 2
What would be the best strategy to integrate multiple datasets that only have limited overlapping population
#25 opened by mzhibo - 8
- 1
Feature request: Interactive plotting function
#12 opened by kevinwang09 - 1
Error in neighbour_batch2[neighbour_batch1[l]] : invalid subscript type 'list'
#31 opened by yuyuanyuana - 2
- 1
Error message: Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘assay’ for signature ‘"character", "character"’
#33 opened by legeinei123 - 1
scRUVIII Contrasts Error
#32 opened by DarioS - 3
- 2
Problems running scMerge: Error in ctl2[ctl] <- TRUE : invalid subscript type 'list'
#27 opened by shaln - 1
SEG random initialisation error
#23 opened by kevinwang09 - 2
can I force installation on a R 3.5 from github?
#22 opened by agranado - 1
Using scMerge with R 3.5
#11 opened by kevinwang09 - 6
scMerge::sce_cbind error with method = "union"
#16 opened by zezhuo - 7
Intergration with DE analysis
#15 opened by crotoc - 7
- 3
- 3
should the value of the scSEG index be low or high to consider that a gene is a stable expressed gene ?
#10 opened by aoumess - 5
- 1
Mixing accuracy
#6 opened by elimereu - 5
- 2
Bioconductor support
#5 opened by robertamezquita - 2
problem during the RUV normalisation
#1 opened by elimereu - 3
Cannot install in macOS
#2 opened by galanisl - 4
Highly Variable Genes and clustering
#3 opened by elimereu