Pinned Repositories
bioconda-recipes
Conda recipes for the bioconda channel.
chromosomes
Just a R data package that contains structural genomic information for widely used genomes
customscripts
A dirty repo with my custom scripts for any project
EaCoN
Easy Copy Number !
EBAII
Supports de cours de l'Ecole de Bioinformatique Aviesan - IFB - Inserm "Initiation au traitement des données de génomique obtenues par séquençage à haut débit"
EBAII_n1_SC_helper
Helper package for the analysis of single cell RNAseq data in the Seurat format
ichorCNA
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
Presentations
SCA
SCA code repository
aoumess's Repositories
aoumess/bioconda-recipes
Conda recipes for the bioconda channel.
aoumess/chromosomes
Just a R data package that contains structural genomic information for widely used genomes
aoumess/customscripts
A dirty repo with my custom scripts for any project
aoumess/EaCoN
Easy Copy Number !
aoumess/EBAII
Supports de cours de l'Ecole de Bioinformatique Aviesan - IFB - Inserm "Initiation au traitement des données de génomique obtenues par séquençage à haut débit"
aoumess/ichorCNA
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
aoumess/mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
aoumess/Presentations
aoumess/SCA
SCA code repository
aoumess/scTKcomp
A supplementary for singleCellTK, filling some "holes" (empty droplets filtering, cell cycle scoring)
aoumess/SC.helper
Helper package for the analysis of single cell RNAseq data in the Seurat format
aoumess/single-cell-drop-seq
A SingleCell RNASeq pre-processing pipeline built on snakemake
aoumess/test
aoumess/wes-mapping-bwa-gatk
Perform WES read mapping, grouping, recalibration and quality controls
aoumess/WisecondorX
WisecondorX — An evolved WISECONDOR
aoumess/workshop-scRNAseq
Single cell RNA sequencing analysis course