Pinned Repositories
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
Basecalling-comparison
A comparison of different Oxford Nanopore basecallers
CALISTA
CALISTA: Clustering And Lineage Inference in Single Cell Transcriptional Analysis
cellrouter
Reconstruction of complex single-cell trajectories using CellRouter
CYP8B1
CYP8B1
monocle-release
samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
seurat
R toolkit for single cell genomics
splatter
Simple simulation of single-cell RNA sequencing data
Bioinfo-websites_collection
A collection Bioinformatics resources : Tutorials, Notes etc...
AswinSSoman's Repositories
AswinSSoman/Basecalling-comparison
A comparison of different Oxford Nanopore basecallers
AswinSSoman/bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
AswinSSoman/CYP8B1
CYP8B1
AswinSSoman/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
AswinSSoman/aswinsoman.github.io
github url
AswinSSoman/AswinSSoman
AswinSSoman/bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
AswinSSoman/BioAlignments.jl
Sequence alignment tools
AswinSSoman/convert-blast-to-bed
Convert the output of BLAST to a BED file format that's suitable for uploading to JBrowse.
AswinSSoman/Extracting-Core-Claims
An attempt to extract single core claims from scientific articles
AswinSSoman/galaxy-hub
Galaxy Community Hub
AswinSSoman/gff3sort
GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools
AswinSSoman/graphmap
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html
AswinSSoman/hivmmer
Alignment and variant-calling pipeline for Illumina HIV sequences.
AswinSSoman/htslib
C library for high-throughput sequencing data formats
AswinSSoman/kBET
An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
AswinSSoman/Mammal_ADH_IV
comparative genetics of mammalian alcohol dehydrogenase IV
AswinSSoman/MelBioInf_docs
Melbourne Bioinformatics documentation in markdown format
AswinSSoman/nixnote2
Nixnote - A clone of Evernote for Linux
AswinSSoman/R.io
A collection of repositories related to R.
AswinSSoman/Rstudio.io
AswinSSoman/SAFEclustering
SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data
AswinSSoman/scABC
AswinSSoman/scanorama
Panoramic stitching of heterogeneous single cell transcriptomic data
AswinSSoman/scRNAseq-analysis-notes
my scRNAseq analysis notes
AswinSSoman/single_cell_portal
Tutorials, workflows, and convenience scripts for Single Cell Portal
AswinSSoman/SingleR
SingleR: Single-cell RNA-seq cell types Recognition
AswinSSoman/tutorials
:books: Various bioinformatics tutorials
AswinSSoman/umap
Uniform Manifold Approximation and Projection
AswinSSoman/viral-ngs
Viral genomics analysis pipelines