AswinSSoman
@AswinSSoman Graduate, Curently doing Ph.D, Bioinformatician & auto enthusiast.
IISER Bhopal, IndiaBhopal
Pinned Repositories
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
Basecalling-comparison
A comparison of different Oxford Nanopore basecallers
CALISTA
CALISTA: Clustering And Lineage Inference in Single Cell Transcriptional Analysis
cellrouter
Reconstruction of complex single-cell trajectories using CellRouter
CYP8B1
CYP8B1
monocle-release
samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
seurat
R toolkit for single cell genomics
splatter
Simple simulation of single-cell RNA sequencing data
Bioinfo-websites_collection
A collection Bioinformatics resources : Tutorials, Notes etc...
AswinSSoman's Repositories
AswinSSoman/CALISTA
CALISTA: Clustering And Lineage Inference in Single Cell Transcriptional Analysis
AswinSSoman/cellrouter
Reconstruction of complex single-cell trajectories using CellRouter
AswinSSoman/slingshot
Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
AswinSSoman/applied-computational-genomics
Applied Computational Genomics Course at UU: Spring 2018
AswinSSoman/B-SCITE
AswinSSoman/bam-readcount
count DNA sequence reads in BAM files
AswinSSoman/BEARscc
AswinSSoman/center-align
Center-align the text in a string.
AswinSSoman/CIDR
Clustering through Imputation and Dimensionality Reduction
AswinSSoman/color-thief-site
AswinSSoman/conquer
consistent quantification of external RNA-seq data sets
AswinSSoman/CourseData
AswinSSoman/M3Drop
AswinSSoman/polyester
Bioconductor package "polyester", devel version. RNA-seq read simulator.
AswinSSoman/powsimR
Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially expressed genes. PowsimR is a flexible tool to simulate and evaluate differential expression from bulk and especially single-cell RNA-seq data making it suitable for a priori and posterior power analyses.
AswinSSoman/prosstt
PRObabilistic Simulations of ScRNA-seq Tree-like Topologies
AswinSSoman/SC3
A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments
AswinSSoman/scell
Single-CELL rna-seq analysis software
AswinSSoman/scRNASeqPipeline
AswinSSoman/single-cell-bioinformatics
Course material in notebook format for learning about single cell bioinformatics methods
AswinSSoman/single_cell_analysis
Documents used for workshops on single cell analysis
AswinSSoman/singleCellSeq
Batch effects and the effective design of single-cell gene expression studies
AswinSSoman/SymSim
Create symbolic links to CoreSimulator directories to make it easier to find them
AswinSSoman/topographer
AswinSSoman/TSCAN
TSCAN: Tools for Single-Cell ANalysis
AswinSSoman/warpDE
AswinSSoman/zinbwaveZinger
Integrating zingeR with ZINB-WaVE weights