SynapticSage
Sr MLE 💻 Ph.D., Computational/Sys Neuro || ANNs 🦾, Statistics, and Applied Math ∂, and Data Science
Brandeis UniversityBoston, Massachusetts
Pinned Repositories
CA1PFC_blender_models
3D brain models for pubs and presentations
CommandLine_Tetris
Implemented Tetris at the command-line terminal (pure text characters, no GUI) in C++ for fun. About a week of code. Originally tested in PowerShell.
CoNNECT
(ryoung mod, GPU version) CoNNECT: Convolutional Neural Network for Estimating synaptic Connectivity from spike Trains. Endo et al., bioRxiv (2020).
GIN
Machine Learning for Olfactory datasets -- "G_raph I_nference for N_oses". Downstream goal: odorant mixtures. (ryan's code)
github2file
ry's fork of github2file :: modified for multi-file type and allowing local zip file input ... useful for passing githubrepo to gemini/claude/etc
GoalFetchTask-AnalysisTools
List of scripts and functions used to pry future-past related codes in the HPC-PFC system
mlab-utils
(🌌🔍 Vastly simplifies working with filter-framework datafiles...📂💡) Collection of core tools I've built to deal with fillter framework and nd branched cell types in JLab.
Neural_Realime-ClosedLoop-PhaseDisruption
RY's module for real-time, closed-loop interruption of brain activity --- detects theta (or beta) phase and triggering optogenetic disruption using the SpikeGadgets software environment (https://spikegadgets.com/)
TetroMate__GoogleAssistant
Google Assistant driven tetrode lowering. Let's you take notes about how tetrodes are being lowered with convenient voice commands. Works well with natural language e.g. "lower 5 on tetrode 6" or just "5 on 6", or even other variations. Automatically creates a webpage table representing your tetrode lowering notes.
SynapticSage's Repositories
SynapticSage/github2file
ry's fork of github2file :: modified for multi-file type and allowing local zip file input ... useful for passing githubrepo to gemini/claude/etc
SynapticSage/mlab-utils
(🌌🔍 Vastly simplifies working with filter-framework datafiles...📂💡) Collection of core tools I've built to deal with fillter framework and nd branched cell types in JLab.
SynapticSage/CA1PFC_blender_models
3D brain models for pubs and presentations
SynapticSage/Metaprompt
a library that focuses of metaprompting built atop core conversations exported from google ai studio.
SynapticSage/MuseEEGHeadset-Scrubber
Scrubs data from Muse EEG headset into a Tidy Data format. https://www.wikiwand.com/en/Tidy_data
SynapticSage/Neural_Realime-ClosedLoop-PhaseDisruption
RY's module for real-time, closed-loop interruption of brain activity --- detects theta (or beta) phase and triggering optogenetic disruption using the SpikeGadgets software environment (https://spikegadgets.com/)
SynapticSage/Reaction-Time-from-EEG_MuseHeadset
This library learns to estimate human reaction times from consumer EEG data.
SynapticSage/ThetaCoherence
Initial exploratory code into coherence at track points of interest.
SynapticSage/Bettermarks
Bookmarking system for Bash and Zsh
SynapticSage/CommandLine_Tetris
Implemented Tetris at the command-line terminal (pure text characters, no GUI) in C++ for fun. About a week of code. Originally tested in PowerShell.
SynapticSage/config
git control of my key configuration files (neovim, spacemacs, and tmux)
SynapticSage/GIN
Machine Learning for Olfactory datasets -- "G_raph I_nference for N_oses". Downstream goal: odorant mixtures. (ryan's code)
SynapticSage/mountainsort-2-phy
Converts moutainsorted clusters to phy for curation using SpikeInterface. Includes a plugin to add mountainsort cluster metrics to phy.
SynapticSage/TetroMate__GoogleAssistant
Google Assistant driven tetrode lowering. Let's you take notes about how tetrodes are being lowered with convenient voice commands. Works well with natural language e.g. "lower 5 on tetrode 6" or just "5 on 6", or even other variations. Automatically creates a webpage table representing your tetrode lowering notes.
SynapticSage/DI.jl
Julia based Data Interface for my electrophysiology and behavior data. All data types are Tidy Data based DataFrame objects (rows=samples, cols=properties of samples)
SynapticSage/DIutils
This package split from a much larger git repo that comprised my julia lab code environment. Contains my homebrew utilties used on DI.jl based neural data analysis. Short one-off functions I lean on to save time often go here.
SynapticSage/embed
CLI for embedding (RY's)
SynapticSage/fabric
ryoungs fork -- storing commonly used CLI prompts ----- fabric is an open-source framework for augmenting humans using AI. It provides a modular framework for solving specific problems using a crowdsourced set of AI prompts that can be used anywhere.
SynapticSage/hls4ml
K3-support : Machine learning on FPGAs using HLS
SynapticSage/mods_whisper_real_time
ryoung mods, Real time transcription with OpenAI Whisper.
SynapticSage/NeuroMetrics.jl
Contains Julia code for a large variety of analyses, from manifolds, to pseudocausality, to TCA, to time-shifted receptive field analyses.
SynapticSage/orgroam2obsidian
Small script that ports your Org Roam notes to Obsidian
SynapticSage/Plots.jl
(ryoung mods) Powerful convenience for Julia visualizations and data analysis
SynapticSage/RatInABox
(ryoung mods) A python package for modelling locomotion in complex environments and spatially/velocity selective cell activity.
SynapticSage/RedditCommentBackup
SynapticSage/Resume-Matcher
Resume Matcher is an open source, free tool to improve your resume. It works by using language models to compare and rank resumes with job descriptions.
SynapticSage/RNN-AttractorNetwork-NewsomeShadlinTask
This library instantiates an RNN to solve Newsome & Shadlin's task -- two types of input and a context to decide which to attend. It does so with an itinerating attractor network.
SynapticSage/SynapticSage
SynapticSage/temp
SynapticSage/token-count