SynapticSage

CA1PFC_blender_models

3D brain models for pubs and presentations

CommandLine_Tetris

Implemented Tetris at the command-line terminal (pure text characters, no GUI) in C++ for fun. About a week of code. Originally tested in PowerShell.

CoNNECT

(ryoung mod, GPU version) CoNNECT: Convolutional Neural Network for Estimating synaptic Connectivity from spike Trains. Endo et al., bioRxiv (2020).

GIN

Machine Learning for Olfactory datasets -- "G_raph I_nference for N_oses". Downstream goal: odorant mixtures. (ryan's code)

github2file

ry's fork of github2file :: modified for multi-file type and allowing local zip file input ... useful for passing githubrepo to gemini/claude/etc

GoalFetchTask-AnalysisTools

List of scripts and functions used to pry future-past related codes in the HPC-PFC system

mlab-utils

(🌌🔍 Vastly simplifies working with filter-framework datafiles...📂💡) Collection of core tools I've built to deal with fillter framework and nd branched cell types in JLab.

Neural_Realime-ClosedLoop-PhaseDisruption

RY's module for real-time, closed-loop interruption of brain activity --- detects theta (or beta) phase and triggering optogenetic disruption using the SpikeGadgets software environment (https://spikegadgets.com/)

TetroMate__GoogleAssistant

Google Assistant driven tetrode lowering. Let's you take notes about how tetrodes are being lowered with convenient voice commands. Works well with natural language e.g. "lower 5 on tetrode 6" or just "5 on 6", or even other variations. Automatically creates a webpage table representing your tetrode lowering notes.

SynapticSage/github2file

ry's fork of github2file :: modified for multi-file type and allowing local zip file input ... useful for passing githubrepo to gemini/claude/etc

SynapticSage/mlab-utils

(🌌🔍 Vastly simplifies working with filter-framework datafiles...📂💡) Collection of core tools I've built to deal with fillter framework and nd branched cell types in JLab.

SynapticSage/CA1PFC_blender_models

3D brain models for pubs and presentations

SynapticSage/Neural_Realime-ClosedLoop-PhaseDisruption

RY's module for real-time, closed-loop interruption of brain activity --- detects theta (or beta) phase and triggering optogenetic disruption using the SpikeGadgets software environment (https://spikegadgets.com/)

SynapticSage/ThetaCoherence

Initial exploratory code into coherence at track points of interest.

SynapticSage/Bettermarks

Bookmarking system for Bash and Zsh

SynapticSage/CommandLine_Tetris

Implemented Tetris at the command-line terminal (pure text characters, no GUI) in C++ for fun. About a week of code. Originally tested in PowerShell.

SynapticSage/config

git control of my key configuration files (neovim, spacemacs, and tmux)

SynapticSage/GIN

Machine Learning for Olfactory datasets -- "G_raph I_nference for N_oses". Downstream goal: odorant mixtures. (ryan's code)

SynapticSage/GoalFetchTask-AnalysisTools

List of scripts and functions used to pry future-past related codes in the HPC-PFC system

SynapticSage/mountainsort-2-phy

Converts moutainsorted clusters to phy for curation using SpikeInterface. Includes a plugin to add mountainsort cluster metrics to phy.

SynapticSage/MuseEEGHeadset-Scrubber

Scrubs data from Muse EEG headset into a Tidy Data format. https://www.wikiwand.com/en/Tidy_data

SynapticSage/Reaction-Time-from-EEG_MuseHeadset

This library learns to estimate human reaction times from consumer EEG data.

SynapticSage/TetroMate__GoogleAssistant

Google Assistant driven tetrode lowering. Let's you take notes about how tetrodes are being lowered with convenient voice commands. Works well with natural language e.g. "lower 5 on tetrode 6" or just "5 on 6", or even other variations. Automatically creates a webpage table representing your tetrode lowering notes.

SynapticSage/data-pipeline

ryoung's current data processing pipeline in Jadhav Lab

SynapticSage/DeepInsight

(ryoung mods) A general framework for interpreting wide-band neural activity

SynapticSage/DI.jl

Julia based Data Interface for my electrophysiology and behavior data. All data types are Tidy Data based DataFrame objects (rows=samples, cols=properties of samples)

SynapticSage/DIutils

This package split from a much larger git repo that comprised my julia lab code environment. Contains my homebrew utilties used on DI.jl based neural data analysis. Short one-off functions I lean on to save time often go here.

SynapticSage/embed

CLI for embedding (RY's)

SynapticSage/fabric

ryoungs fork -- storing commonly used CLI prompts ----- fabric is an open-source framework for augmenting humans using AI. It provides a modular framework for solving specific problems using a crowdsourced set of AI prompts that can be used anywhere.

SynapticSage/GLM-CFC

A GLM based approach to measure CFC

SynapticSage/julia-party-parrot

julia party parrot animation for funsies

SynapticSage/Metaprompt

a library that focuses of metaprompting built atop core conversations exported from google ai studio.

SynapticSage/mods_whisper_real_time

ryoung mods, Real time transcription with OpenAI Whisper.

SynapticSage/NeuroMetrics.jl

Contains Julia code for a large variety of analyses, from manifolds, to pseudocausality, to TCA, to time-shifted receptive field analyses.

SynapticSage/Plots.jl

(ryoung mods) Powerful convenience for Julia visualizations and data analysis

SynapticSage/RatInABox

(ryoung mods) A python package for modelling locomotion in complex environments and spatially/velocity selective cell activity.

SynapticSage/Resume-Matcher

Resume Matcher is an open source, free tool to improve your resume. It works by using language models to compare and rank resumes with job descriptions.

SynapticSage/RNN-AttractorNetwork-NewsomeShadlinTask

This library instantiates an RNN to solve Newsome & Shadlin's task -- two types of input and a context to decide which to attend. It does so with an itinerating attractor network.

SynapticSage/SynapticSage