SyneRBI/SIRF-Exercises

Issues

• DL LM notebook and location of data

  #233 opened 8 months ago by KrisThielemans
  1

• PET/DIY_OSEM.py missing line in MLEM solution

  #236 opened 8 months ago by MargaretDuff
  1

• SPECT README.md

  #229 opened 8 months ago by KrisThielemans
  1

• Issues installing torch with the GPU on top of synerbi/sirf:service-gpu

  #213 opened 10 months ago by Imraj-Singh
  13

• Better way to have answers to exercises

  #223 opened 8 months ago by KrisThielemans
  0

• git status again problematic

  #217 opened 10 months ago by KrisThielemans
  3

• notebooks still refer to www.ccppetmr.ac.uk but that no longer exists

  #220 opened 10 months ago by KrisThielemans
  0

• gradient descent notebook

  #193 opened 2 years ago by KrisThielemans
  8

• docker image out of date

  #215 opened 10 months ago by KrisThielemans
  3

• download_data.sh on the STFC cloud

  #179 opened 3 years ago by KrisThielemans
  2

• Dual_PET_Answer notebooks don't have update_bowsher_weights

  #199 opened 2 years ago by KrisThielemans
  1

• SPECT Y90 data

  #188 opened 2 years ago by KrisThielemans
  8

• cd_to_working_dir() to get_working_dir

  #121 opened 4 years ago by ashgillman
  2

• Video Link For OOP not working

  #209 opened 2 years ago by rmapree
  2

• Update x_init to initial when calling FISTA in SIRF-Exercises/notebooks/MR

  #201 opened 2 years ago by Letizia97
  1

• gaussian_filter deprecation warning

  #198 opened 2 years ago by KrisThielemans
  0

• create requirements.yml

  #197 opened 2 years ago by KrisThielemans
  1

• need .gitattributes

  #208 opened 2 years ago by KrisThielemans
  0

• environment.yml should list pip

  #202 opened 2 years ago by KrisThielemans
  2

• Problem with normalization header in /notebooks/PET/reconstruct_measured_data.ipynb

  #206 opened 2 years ago by pinamarco
  6

• cil should be added to environment.yml

  #203 opened 2 years ago by KrisThielemans
  4

• about the normalization of NEMA data

  #186 opened 2 years ago by mele-y
  2

• HKEM notebook run-time

  #196 opened 2 years ago by KrisThielemans
  1

• BrainWeb notebook writes data in wrong path

  #194 opened 2 years ago by KrisThielemans
  0

• ASTRA not installed on the VM (and docker probably) so Introductory/acquisition_model_mr_pet_ct.ipynb fails

  #190 opened 2 years ago by KrisThielemans
  0

• MissingIDFieldWarning

  #191 opened 2 years ago by KrisThielemans
  7

• matplotlib

  #177 opened 2 years ago by DANAJK
  8

• shorten license info by using spdx identifier

  #175 opened 2 years ago by KrisThielemans
  0

• 4_setup_training notebook deep learning

  #184 opened 2 years ago by danieldeidda
  4

• Remaining Jupyter notebooks issues

  #156 opened 3 years ago by evgueni-ovtchinnikov
  16

• some SPECT notebooks use ~/SIRF-Exercises

  #176 opened 3 years ago by KrisThielemans
  1

• path problem in synergistic notebooks

  #148 opened 3 years ago by KrisThielemans
  5

• download_data.sh without flags does not error

  #152 opened 3 years ago by paskino
  2

• Singleton first dimension problems in BrainWeb-single_slice_motion.ipynb

  #154 opened 3 years ago by DANAJK
  3

• MR notebook e has dimensionality error due to splitting complex to real

  #150 opened 3 years ago by johannesmayer
  1

• problem in PET/reconstruct_measured_data due to SIRF bug

  #146 opened 3 years ago by KrisThielemans
  2

• SIRF-Exercises cannot be run unless download_data.sh is called!!!

  #134 opened 3 years ago by paskino
  2

• Does reconstruct_measured_data run on JupyterHub with the cp command

  #141 opened 3 years ago by ashgillman
  2

• reconstruct_measured_data bugs

  #144 opened 4 years ago by ashgillman
  1

• [1 1 1] kernel for MAPEM?

  #142 opened 4 years ago by ashgillman
  0

• HKEM notebook refers to data that doesn't exist

  #124 opened 4 years ago by paskino
  6

• Geometry notebook has wrong RAH2LPH matrix

  #136 opened 4 years ago by johannesmayer
  2

• exercises_data_path fails after doing download_data_path.sh without options

  #116 opened 4 years ago by KrisThielemans
  3

• Docker does not need to start gadgetron, but instructions say you do.

  #113 opened 4 years ago by AnderBiguri
  7

• Defragmenting docs: VM installation

  #122 opened 4 years ago by AnderBiguri
  6

• Jupyterhub: reconstruc_measured_data error

  #120 opened 4 years ago by paskino
  15

• OSEM_reconstruction notebook Error

  #119 opened 4 years ago by paskino
  8

• Jupyterhub: Path to real data in NEMA IQ example

  #123 opened 4 years ago by paskino
  2

• MR notebooks

  #112 opened 4 years ago by DANAJK
  4

• download_data.sh - use only flags not positional arguments

  #106 opened 4 years ago by ashgillman
  0