Pinned Repositories
transformers
🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.
mhcflurry
Peptide-MHC I binding affinity prediction
esm-py311
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
anndata
Annotated data.
stitchr
Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info
esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
soNNia
clearml-agent
ClearML Agent - ML-Ops made easy. ML-Ops scheduler & orchestration solution
LOMO
LOMO: LOw-Memory Optimization
airr-standards
AIRR Community Data Standards
Synteny Labs's Repositories
SyntenyBio/mhcflurry
Peptide-MHC I binding affinity prediction
SyntenyBio/abstar
VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
SyntenyBio/esm-py311
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
SyntenyBio/airr-standards
AIRR Community Data Standards
SyntenyBio/esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
SyntenyBio/anndata
Annotated data.
SyntenyBio/stitchr
Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info
SyntenyBio/clearml-agent
ClearML Agent - ML-Ops made easy. ML-Ops scheduler & orchestration solution
SyntenyBio/soNNia
SyntenyBio/pronto
A Python frontend to (Open Biomedical) Ontologies.
SyntenyBio/tfold-release
TFold v1.0
SyntenyBio/alphafold
Open source code for AlphaFold.
SyntenyBio/masif
MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
SyntenyBio/transformers
🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.
SyntenyBio/LOMO
LOMO: LOw-Memory Optimization
SyntenyBio/clearml-session
ClearML Remote - CLI for launching JupyterLab / VSCode on a remote machine
SyntenyBio/mhcgnomes
Parsing MHC nomenclature in the wild