/a2cps-datastore-imaging

Primary LanguagePython

Imaging Overview Report

This applicaton takes the imaging data and provides a visual overview of the Report.

Data

The data comes from the Imaging and QC output files from Redcap. These files are loaded using the internal datastore network.

Data Processing - Analysis

The Imaging and QC input data are modified / analyzed to create the following data products The functions outlining these steps are in the data_processing.py file.

Basic Outputs:

  • Completions: Take a set of imaging data and determine which percent for each scan type were completed
  • Roll up: Count of image by site and visit
  • Indicated-Received: data comes in with scans as columns. Lengthens the dataframe to create a scan column with the particular scan as a variable, while preserving the indicated / received columns
  • Ratings: Merges the indicated-received table with the ratings values from the qc table

Logic rules used in the Analysis

Overdue:

  • Use 'surgery_week' column.
  • For Visit 1: overdue if the surgery week is earlier than today
  • For Visit 3: overdue if today is >90 days after the surgery_week date