TBooker
Assistant Professor in forest evolutionary genomics at the University of British Columbia
University of British ColumbiaVancouver, BC
Pinned Repositories
ArabidopsisDuplicationAnalysis
This repository contains the code to run PicMin on the genome scans performed to identify loci that exhibit patterns consistant with adaptation to whole genome duplication
Assisted-Gene-Flow
Code for summarising Remi's SimBit simualtions for the Whitlock lab's projet on assissted gene flow
Chinook
A set of scripts and simulations to generate datasets for the UBC bioinformatics workshop
GlobalAdaptation
This repository contains all the scripts and config files for performing the analyses in our preprint: "Global adaptation confounds the search for local adaptation"
M.m.castaneus_recombination-maps
A repository containing the recombination maps for M. m. castnaeus constructed using LDhelmet
PicMin
PositiveSelection_uSFS
A repo containing the simulation configuration and analysis files for analysing positive selection using the uSFS
Recombination_Fst
A repository containing the scripts and analysis results behind the manuscript "Variation in recombination affects detection of Fst outliers under neutrality"
WZA
UBC-biol525D.github.io
course materials
TBooker's Repositories
TBooker/PicMin
TBooker/Assisted-Gene-Flow
Code for summarising Remi's SimBit simualtions for the Whitlock lab's projet on assissted gene flow
TBooker/Chinook
A set of scripts and simulations to generate datasets for the UBC bioinformatics workshop
TBooker/GlobalAdaptation
This repository contains all the scripts and config files for performing the analyses in our preprint: "Global adaptation confounds the search for local adaptation"
TBooker/Recombination_Fst
A repository containing the scripts and analysis results behind the manuscript "Variation in recombination affects detection of Fst outliers under neutrality"
TBooker/WZA
TBooker/ArabidopsisDuplicationAnalysis
This repository contains the code to run PicMin on the genome scans performed to identify loci that exhibit patterns consistant with adaptation to whole genome duplication
TBooker/Estimate_selection_from_troughs
In this project I'm developing a method to estiamte the parameters of selection from the patterns of diversity around exons and CNEs
TBooker/LocalAdaptationArchitechture
TBooker/Mike_BGS
Simulation and analysis code for Mike Whitlock's BGS project
TBooker/MuridRodentProject
This repo contains the scripts that I'm using for the current murid rodent project as well as scripts to perform the simulations from our 2018 MBE paper (Booker and Keightley)
TBooker/PositiveSelection_uSFS
A repo containing the simulation configuration and analysis files for analysing positive selection using the uSFS
TBooker/Academic_CV
TBooker/AnnotationIssues
TBooker/BGS_RecombinationRateEvolution
TBooker/CodeCampData
A repository for storing data for the codecamp
TBooker/dgconstraint
Scripts for calculating metrics of constraint driving repeatability of adaptation
TBooker/Estimate_simulation_from_troughs
Exploring methods to estiamte selection from the shapes of troughs
TBooker/FRST302
Lecture materials for FRST302
TBooker/IdentifyAnnotationIssues
TBooker/Moi_Mutation_Area
TBooker/mpl_finance
TBooker/MuridRodentTroughs
TBooker/MutAcc_SFS_DFE
TBooker/MutationAreaSlimulations
TBooker/old_personal_website
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TBooker/SimStudy
TBooker/tbooker.github.io
Allan Lab website
TBooker/Thesis
Tom's Thesis
TBooker/TroutGEA