Pinned Repositories
covid_balf
R script for the covid balf data analysis
deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
DL-Biobank
Can deep learning improve genomic prediction of complex human traits? by Pau Bellot, Gustavo de los Campos, Miguel Pérez-Enciso, Genetics
FormicidaeMolecularEvolution
Scripts and how-tos for comparative genomics work.
free-programming-books
:books: Freely available programming books
GMStool
historical_genomics
maize historical genomics
In-depth-NGS-Data-Analysis-Course
Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.
Intro-to-ChIPseq
Intro to ChIPseq using HPC
Intro-to-Shell
Introduction to the Unix shell
TD-lab-Wu's Repositories
TD-lab-Wu/covid_balf
R script for the covid balf data analysis
TD-lab-Wu/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
TD-lab-Wu/DL-Biobank
Can deep learning improve genomic prediction of complex human traits? by Pau Bellot, Gustavo de los Campos, Miguel Pérez-Enciso, Genetics
TD-lab-Wu/FormicidaeMolecularEvolution
Scripts and how-tos for comparative genomics work.
TD-lab-Wu/free-programming-books
:books: Freely available programming books
TD-lab-Wu/GMStool
TD-lab-Wu/historical_genomics
maize historical genomics
TD-lab-Wu/In-depth-NGS-Data-Analysis-Course
Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.
TD-lab-Wu/Intro-to-ChIPseq
Intro to ChIPseq using HPC
TD-lab-Wu/Intro-to-Shell
Introduction to the Unix shell
TD-lab-Wu/KPNN
Knowledge-primed neural networks
TD-lab-Wu/microbial-informatics-2014
Microbial Whole Genome Sequence data analysis labs for 2014
TD-lab-Wu/NGS_Data_Analysis_Course
TD-lab-Wu/oneliners
Useful bash one-liners for bioinformatics.
TD-lab-Wu/Ouroboros
Combination of coevolutionary analysis with expectation-maximization
TD-lab-Wu/physcripts
Python scripts (and a few non-python) that have come in handy for various phylogenetics-related tasks
TD-lab-Wu/referenceseeker
Rapid determination of appropriate reference genomes.
TD-lab-Wu/SARSCoV2origins
A repo with supplementary material for a manuscript on the origin of SARS-CoV-2 origins
TD-lab-Wu/seqlogo
Creating Seqlogo with ggseqlogo
TD-lab-Wu/Tutorials
These files are tutorials for various topics that new and current lab members may want to use.