Welcome to umi4cPackage Github repository.
umi4cPackage is a processing and analysis pipeline for UMI-4C experiment.
The pipeline is designed to run on a standard linux machine. The basic requirements are:
- Perl
- Bowtie2: http://bowtie-bio.sourceforge.net/bowtie2.
- Reference index for Bowtie2.
- R packages:
- devtools.
- misha.
- zoo.
remotes::install_github("tanaylab/umi4cpackage", build_vignette = TRUE)
library(umi4cPackage)Please refer to the package vignette for usage and a complete step by step example.
vignette('umi4c-usage', package='umi4cPackage')