TakumiOtagaki
Asai lab, University of Tokyo. Master's Student. Interested in RNA 2D/3D structure prediction, RNA design and RNA modification! benasque 2024.
University of TokyoTokyo
Pinned Repositories
casp16_Dojo
DiffSortAlign
Alignment Using Differentiable Sorting
jax-rnafold
Extending Outside Algorithm
JAX_Practice
Practice for several JAX functions: @jit, vectorization, for_loop, etc
Kmedoids-parallel
A python script for parallel-Kmedoids.
my_atcoder
atcoder のコードを適当に放り込む
PairProfileHMM-OT
Alignment Using Optimal Transport Cost.
PalindromeDetector
Detect all Palindrome with distance restriction in Linear time and space complexity.
pdb_GWanalysis
PseudoknotVisualizer
Pymol Extension
TakumiOtagaki's Repositories
TakumiOtagaki/PseudoknotVisualizer
Pymol Extension
TakumiOtagaki/casp16_Dojo
TakumiOtagaki/DiffSortAlign
Alignment Using Differentiable Sorting
TakumiOtagaki/jax-rnafold
Extending Outside Algorithm
TakumiOtagaki/JAX_Practice
Practice for several JAX functions: @jit, vectorization, for_loop, etc
TakumiOtagaki/Kmedoids-parallel
A python script for parallel-Kmedoids.
TakumiOtagaki/my_atcoder
atcoder のコードを適当に放り込む
TakumiOtagaki/PairProfileHMM-OT
Alignment Using Optimal Transport Cost.
TakumiOtagaki/PalindromeDetector
Detect all Palindrome with distance restriction in Linear time and space complexity.
TakumiOtagaki/pdb_GWanalysis
TakumiOtagaki/rDNAannotation
TakumiOtagaki/rintc_customized
I customized some parts of rintc in order to calculate Credibility Limits more easily.
TakumiOtagaki/TakumiOtagaki.github.io