TaniaJes

TaniaJes's Stars

• broadinstitute/ssGSEA2.0

  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

  Language:R23279

• VIDA-NYU/bdi-kit

  A Python toolkit for biomedical data integration

  Language:Python41

• xushiabbvie/TDtool

  Language:R6

• rttimms/multiplex_CRISPR_screens

  Analysis of Illumina sequencing data for multiplex CRISPR screens

  Language:Python1

• elijahmena/biogridanalysis

  Timms, Mena et al., 2023 BioGRID Analysis

  Language:R1

• SchedMD/slurm

  Slurm: A Highly Scalable Workload Manager

  Language:C2.6k653

• igordot/sns

  Analysis pipelines for genomic sequencing data

  Language:Shell6126

• PoisonAlien/maftools

  Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

  Language:R440217

• MannLabs/CKG

  Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge discovery making use of all the information contained in the graph

  Language:Jupyter Notebook42797

• micrisor/NAT-ML

  Language:Jupyter Notebook287

• cclab-brca/neoadjuvant-therapy-response-predictor

  Language:R4727

• Chenlab-UMN/Ub-E3-ligase-Activity-Profiling-Analysis

  UbE3-APA identifies significantly activated or suppressed E3 ligases based on quantitative ubiquitylome proteomics datasets

  Language:Python21

• klarman-cell-observatory/perturbseq

  Perturb-seq analysis package

  Language:Python133

• klarman-cell-observatory/sc_eVIP

  Variant impact phenotyping using Perturb-seq

  Language:Jupyter Notebook82

• cancerdatasci/ceres

  Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens

  Language:R2714

• davidliwei/awesome-CRISPR

  List of software/websites/databases/other stuff for genome engineering

  486107

• WangLab-MSSM/DreamAI

  Imputation of missing values of a matrix or data.frame using iterative prediction model

  317

• broadinstitute/protigy

  Proteomics Toolset for Integrative Data Analysis

  Language:R2216

• dypsilon/frontend-dev-bookmarks

  Manually curated collection of resources for frontend web developers.

  42.2k5.1k

• rstudio/shinydashboard

  Shiny Dashboarding framework

  Language:CSS893300

• igordot/nichexplorer

  An interactive query and visualization tool for populations of the bone marrow niche

  Language:R5

• NYU-BFX/hic-bench

  A set of pipelines for Hi-C and ChIP-Seq analysis.

  Language:HTML4320

• cvalenzuela/hpc

  A quick reference to access NYU High Performance Computing

  11727

• MultiQC/MultiQC

  Aggregate results from bioinformatics analyses across many samples into a single report.

  Language:JavaScript1.2k595

• cole-trapnell-lab/monocle-release

  Language:R276116

• arnavm/multimodal-scRNA-seq

  Figure depicting the breadth of multimodal scRNA-seq technologies

  143

• broadinstitute/picard

  A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

  Language:Java967370

• samtools/samtools

  Tools (written in C using htslib) for manipulating next-generation sequencing data

  Language:C1.6k576

• igordot/scooter

  single-cell RNA-seq analysis pipeline

  Language:R41

• ayeaton/scooterRMD

  Language:HTML1