TaoYang-dev

Bioinformatics and Statistician working in Pharma R&D.

Pinned Repositories

AdRoit
Accurate and robust method to infer complex transcriptome composition
Language:Jupyter Notebook0 2 10
ChIP-seq-QC-pipeline
perform intersecting, peak calling, run IDR, compute QC metrics
0 1 00
Deeprimer
A Python library to predict the performance of designed primer sets for amplicon sequencing; implements tensorflow and sklearn; performs K-mer sequence analysis, motif discovery, local alignment
Language:Python2 1 00
gIDR
Generalized irreproducbile discover rate
Language:R01
Hi-C-analysis-pipeline
perform alignment, quality control, generating Hi-C intra-chromosome matrix, normalization, calling Hi-C peaks, hierarchical clustering between cell lineages
Language:Perl0 1 00
hicrep
R package to evaluate the reproducibility of Hi-C data
Language:R25 2 164
Motif-analysis-pipeline
de novo motif discovery and motif scanning in batch
00
mTDR
R package to comprehensively evaluate the reproducibility of chromatin profiling sequencing data
Language:R1 1 00
Omics-integrative-analysis
integrative multi-omics (i.e., mRNA, miRNA, methylation) analysis of TCGA Glioma data; implements gene co-expression network
00
TDR
Tail dependence as reproducibility measure
Language:R10

TaoYang-dev/hicrep
R package to evaluate the reproducibility of Hi-C data
Language:R25 2 164
TaoYang-dev/Deeprimer
A Python library to predict the performance of designed primer sets for amplicon sequencing; implements tensorflow and sklearn; performs K-mer sequence analysis, motif discovery, local alignment
Language:Python2 1 00
TaoYang-dev/mTDR
R package to comprehensively evaluate the reproducibility of chromatin profiling sequencing data
Language:R1 1 00
TaoYang-dev/TDR
Tail dependence as reproducibility measure
Language:R10
TaoYang-dev/AdRoit
Accurate and robust method to infer complex transcriptome composition
Language:Jupyter Notebook0 2 10
TaoYang-dev/ChIP-seq-QC-pipeline
perform intersecting, peak calling, run IDR, compute QC metrics
0 1 00
TaoYang-dev/gIDR
Generalized irreproducbile discover rate
Language:R01
TaoYang-dev/Hi-C-analysis-pipeline
perform alignment, quality control, generating Hi-C intra-chromosome matrix, normalization, calling Hi-C peaks, hierarchical clustering between cell lineages
Language:Perl0 1 00
TaoYang-dev/Motif-analysis-pipeline
de novo motif discovery and motif scanning in batch
00
TaoYang-dev/Omics-integrative-analysis
integrative multi-omics (i.e., mRNA, miRNA, methylation) analysis of TCGA Glioma data; implements gene co-expression network
00
TaoYang-dev/straw
Extract data quickly from Juicebox via straw
Language:C++0 0 00