Indexer web tool

Assign controlled labels to different types of documents, mainly in Spanish language.

Supported labels:

DeCS (Descriptores en Ciencias de la Salud), analog Spanish version of English MeSH terms
HPO (Human Phenotype Ontology) (future feature)

Supported types of documents:

Scientific articles from IBECS (Índice Bibliográfico Español en Ciencias de la Salud)
Scientific articles from LILACS (Literatura Latinoamericana y del Caribe en Ciencias de la Salud)
Clinical studies from REec (Registro Español de estudios clínicos)
Clinical research projects from Portal FIS (Fondo de Investigación en Salud)
Patents in Spanish from Google Patents

Applications

The main objective of indexing documents is to obtain a gold-standard set (i.e. annotated by humans) that maps the text within each document to some of those controlled labels.

Implementation

The technologies that build this tool are:

MongoDB for database
Flask for backend
Angular for frontend
NGINX for server and proxy
Docker Compose for development and production deployment

Usage

$ git clone https://github.com/TeMU-BSC/indexer.git
$ cd indexer

Development

$ docker-compose up

Production

$ docker-compose -f docker-compose.prod.yml up --build -d