Terkild

CellBender

CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.

CITE-seq_optimization

Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments

CTCL_KC_SA_presentation

Code used in analysis for the article "Keratinocytes present Staphylococcus aureus enterotoxins and promote malignant and non-malignant T cell proliferation in cutaneous T cell lymphoma"

CTCL_SE_drug_resistance

fcutility

Utility functions for working with Flow Cytometry data in R

multisce

Package for loading and separating multiple (alternative) experiments into smaller elements to provide more flexibility in loading and saving large highly multi-modal datasets

numbat

Haplotype-aware CNV analysis from single-cell RNA-seq

scfeaturerank

Feature Rank plot for single-cell analysis (developed for evaluation of (EC)CITE-seq optimizations).

scutility

Utility functions for scRNA-seq focused on ECCITE-seq analysis

scvdj

Package for analyzing VDJ (T-/B-cell receptor) clones in single-cell data

Terkild/CITE-seq_optimization

Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments

Terkild/scutility

Utility functions for scRNA-seq focused on ECCITE-seq analysis

Terkild/scvdj

Package for analyzing VDJ (T-/B-cell receptor) clones in single-cell data

Terkild/CTCL_KC_SA_presentation

Code used in analysis for the article "Keratinocytes present Staphylococcus aureus enterotoxins and promote malignant and non-malignant T cell proliferation in cutaneous T cell lymphoma"

Terkild/CTCL_SE_drug_resistance

Terkild/fcutility

Utility functions for working with Flow Cytometry data in R

Terkild/multisce

Package for loading and separating multiple (alternative) experiments into smaller elements to provide more flexibility in loading and saving large highly multi-modal datasets

Terkild/numbat

Haplotype-aware CNV analysis from single-cell RNA-seq

Terkild/scfeaturerank

Feature Rank plot for single-cell analysis (developed for evaluation of (EC)CITE-seq optimizations).