Pinned Repositories
Baltic_Lab_Wild
Scripts and data associated with "Genome-wide signatures of synergistic epistasis during parallel adaptation in a Baltic Sea copepod"
cbi_reference_databases
Tools for building reference databases
ConsIter
Python script to generate a reference-guided viral consensus sequence using an iterative mapping and variant calling approach
Crustacean_HiC
Pipeline for aligning and processing Crustacean HiC data
filter_reads
Scripts to filter sequence reads of microbial contamination
HPV-genotyping
Collection of scripts and commands for analyzing Illumina-sequence-based HPV genotyping data
interspecific_rnaseq
NEE2020
Scripts to facilitate the analyses (post SNP-calling) of Stern and Lee 2020. Evolutionary origins of genomic adaptations in an invasive copepod
poolseq_utils
Scripts to process allele frequency files used in PoolSeq analyses
viral-assembly-variant-calling
Snakemake pipeline to assemble a viral consensus sequence, and optionally call SNPs and haplotypes
TheDBStern's Repositories
TheDBStern/poolseq_utils
Scripts to process allele frequency files used in PoolSeq analyses
TheDBStern/interspecific_rnaseq
TheDBStern/NEE2020
Scripts to facilitate the analyses (post SNP-calling) of Stern and Lee 2020. Evolutionary origins of genomic adaptations in an invasive copepod
TheDBStern/Baltic_Lab_Wild
Scripts and data associated with "Genome-wide signatures of synergistic epistasis during parallel adaptation in a Baltic Sea copepod"
TheDBStern/viral-assembly-variant-calling
Snakemake pipeline to assemble a viral consensus sequence, and optionally call SNPs and haplotypes
TheDBStern/cbi_reference_databases
Tools for building reference databases
TheDBStern/ConsIter
Python script to generate a reference-guided viral consensus sequence using an iterative mapping and variant calling approach
TheDBStern/Crustacean_HiC
Pipeline for aligning and processing Crustacean HiC data
TheDBStern/filter_reads
Scripts to filter sequence reads of microbial contamination
TheDBStern/HPV-genotyping
Collection of scripts and commands for analyzing Illumina-sequence-based HPV genotyping data
TheDBStern/minima
Minima is a one-size-fits-all Jekyll theme for writers.
TheDBStern/PhyloDE
TheDBStern/recombination_simulations_phylo
TheDBStern/ResearchAnalyticsLabs
TheDBStern/rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
TheDBStern/RNASeqQC_Alignment
Introductory practical training
TheDBStern/sicb2018
TheDBStern/thedbstern.github.io
David B. Stern website
TheDBStern/TOgA