TheJaeger
Senior software engineer at Flywheel.io with background in neuroscience and genomics. Somewhat of a Python wizard.
Flywheel.ioCharleston, SC
Pinned Repositories
dTractSeg
A TractSeg pipeline compatible with PyDesigner outputs
mcr-v97
Matlab (C) Runtime for Matlab R2019b (v.9.7) in Docker
mcr-v98
Matlab (C) Runtime for Matlab R2020a (v.9.8) in Docker
3d-vasculature-segmentation
MATLAB script to segment 3D vasculature obtained from confocal microscopy, as well as to derive statistics
bottle-detection
This problem requires the detection of imporperly filled bottles on a factory production line.
BrukerPy
Bruker file I/O handling to standardize animal data
bubble-counting
This process code automates bubble counting process for requirements such as quality control on a soft-drink manufacturing production line.
dicomSort
A tool to recursively search for and sort dicom files regardless of folder structure
Marlin
Optimized firmware for RepRap 3D printers based on the Arduino platform.
PyDesigner
Python Port of NYU's DKI-Designer Pipeline
TheJaeger's Repositories
TheJaeger/3d-vasculature-segmentation
MATLAB script to segment 3D vasculature obtained from confocal microscopy, as well as to derive statistics
TheJaeger/dicomSort
A tool to recursively search for and sort dicom files regardless of folder structure
TheJaeger/PyDesigner
Python Port of NYU's DKI-Designer Pipeline
TheJaeger/bottle-detection
This problem requires the detection of imporperly filled bottles on a factory production line.
TheJaeger/BrukerPy
Bruker file I/O handling to standardize animal data
TheJaeger/bubble-counting
This process code automates bubble counting process for requirements such as quality control on a soft-drink manufacturing production line.
TheJaeger/Marlin
Optimized firmware for RepRap 3D printers based on the Arduino platform.
TheJaeger/CellStats-Calretinin
MATLAB script for generating statistics in calretinin images for control vs. diseases samples
TheJaeger/CellStats-Ki16
MATLAB scripts to generate MST-based statistics on cells in control vs. diseased samples
TheJaeger/docker-fsl
FSL docker container for Brainlife use
TheJaeger/FBI
Fiber Ball Imaging (FBI) for white matter quantification
TheJaeger/FBWM
Fiber ball white matter modeling
TheJaeger/FSMakeROI
A CLI tool to extract ROIs from Freesurfer's segmentation file
TheJaeger/latexcv
:necktie: A collection of cv and resume templates written in LaTeX. Leave an issue if your language is not supported!
TheJaeger/matGeom
Matlab geometry toolbox for 2D/3D geometric computing
TheJaeger/Mitropoulos_CPP_Course
Code and exercises related to course on Udemy
TheJaeger/mrtrix3
MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density
TheJaeger/quick-portfolio
Use this template if you need a quick developer / data science portfolio! Based on a Minimal Jekyll theme for GitHub Pages.
TheJaeger/RNAseq-Processing
A pipeline developed to process mRNA or miRNA data derived from RNA sequencing.
TheJaeger/shields
Concise, consistent, and legible badges in SVG and raster format
TheJaeger/smriprep
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
TheJaeger/steam-rom-manager
An app for managing ROMs in Steam
TheJaeger/test-code
Tests source repo for GitHub actions
TheJaeger/test-compiler
Tests compiler rep for GitHub actions
TheJaeger/theknightswhosaynii
A CLI for generating report on NifTi BIDS sidecar (.json) to evalue study consistency
TheJaeger/vistasoft
VISTASOFT is the main software repository of the VISTA lab at Stanford University.