Pinned Repositories
tidytacos
Functions to manipulate and visualize microbial community data
16S-Metatranscriptomic-Analysis
NextFlow Pipelines for Qiime2 & Kraken2 metagenomic|metatranscriptomic analyses
ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
BiobakeryUtils.jl
A companion package for Microbiome.jl for working with the Biobakery family of computational tools
BIU
BIoinformatics Utilities
cocpyth
Command line interface to generate Call of Cthulhu characters
etn
Electronic Traineeship Notebook for BIT @ HOME
GTDBTk-docker-cli
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
phlogiston
Python package to work with fictional star chart data.
TheOafidian's Repositories
TheOafidian/BIU
BIoinformatics Utilities
TheOafidian/16S-Metatranscriptomic-Analysis
NextFlow Pipelines for Qiime2 & Kraken2 metagenomic|metatranscriptomic analyses
TheOafidian/ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
TheOafidian/BiobakeryUtils.jl
A companion package for Microbiome.jl for working with the Biobakery family of computational tools
TheOafidian/cocpyth
Command line interface to generate Call of Cthulhu characters
TheOafidian/etn
Electronic Traineeship Notebook for BIT @ HOME
TheOafidian/GTDBTk-docker-cli
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
TheOafidian/kraken2
The second version of the Kraken taxonomic sequence classification system
TheOafidian/phlogiston
Python package to work with fictional star chart data.
TheOafidian/bioconda-recipes
Conda recipes for the bioconda channel.
TheOafidian/LT325102025
TheOafidian/mag
Assembly and binning of metagenomes
TheOafidian/microbiome-workshop
This is a template environment, pre-configured to run Github Classroom assessments.
TheOafidian/Miniature_Pallete
Extracting miniature painting colors from an image
TheOafidian/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
TheOafidian/multidiffabundance
A toolkit for the testing of differential abundance with many different tools
TheOafidian/SCARAP
A toolkit for prokaryotic comparative genomics
TheOafidian/scikit-optimize
Sequential model-based optimization with a `scipy.optimize` interface
TheOafidian/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
TheOafidian/taxprofiler
Highly parallelised multi-taxonomic profiling of shotgun and long-read metagenomic data
TheOafidian/test-datasets
Test data to be used for automated testing with the nf-core pipelines
TheOafidian/theoafidian.github.io
My page about brewing recipes
TheOafidian/tidygenomes
Functions to import and process orthogroup data in a tidy way
TheOafidian/traitar3
From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)
TheOafidian/VTOOL
VTool es una herramienta interactiva y amigable, co-diseñada por sus usuarios, para la exploración de perfiles microbianos y data asociada al estudio del microbiota vaginal.