Pinned Repositories
Mach3_dOPM_Manual
Manual for Mach3 Light-sheet Systems
NecroticSegmentation
Methods to segment necrotic tissue from typical HE images
Slice2Volume
Script that registers Histology slices to volumetric image data
Cell-ratio-detection
FociCounter
Performs auto-segmentation of cell nuclei. User then picks viable cells manually and the number of gH2AX foci are counted and their sizes measured.
HE_cell_counting
IF_quantification
This is an ImageJ macro that quantifies immunofluorescent images with two color channels (default: %area, cell number)
IHC_quantification
This is an ImageJ macro designed to characterize IHC staining (default: %area and mean intensity)
OrganoID
test
Theresa-S's Repositories
Theresa-S/Cell-ratio-detection
Theresa-S/FociCounter
Performs auto-segmentation of cell nuclei. User then picks viable cells manually and the number of gH2AX foci are counted and their sizes measured.
Theresa-S/HE_cell_counting
Theresa-S/IF_quantification
This is an ImageJ macro that quantifies immunofluorescent images with two color channels (default: %area, cell number)
Theresa-S/IHC_quantification
This is an ImageJ macro designed to characterize IHC staining (default: %area and mean intensity)
Theresa-S/OrganoID
Theresa-S/test