ThomasCarroll
Director of Bioinformatics Resource Center- The Rockefeller University
@RockefellerUniversity New York, New York
Pinned Repositories
ATAC_Workshop
ATAC_seq Workshop
basecallQC
Tools for working Illumina basecalling and demultiplexing software, bcl2Fastq
bioinformatics-training
ChIPQC_Slides
chipseq-installer
ChIPSeqQC
Automated analysis and interactive reporting for ChIP seq data.
DataVisProjects
Projects on display of biological data
Detecting_Metastasis_Doorways_in_Breast_Cancer_with_ZeroCostDL4Mic
This is a Google Colab notebook based on ZeroCostDL4Mic for training a Deep Learning model (YOLOv2) and predicting TMEM doorways (blood vessel intravasation sites for tumor cells) in FFPE-fixed tumor tissues.
r-intermediate
Website:- https://thomascarroll.github.io/r-intermediate/ Work with Mark Dunning and Matt Eldridge - https://github.com/bioinformatics-core-shared-training/r-intermediate
soGGi
ThomasCarroll's Repositories
ThomasCarroll/soGGi
ThomasCarroll/Detecting_Metastasis_Doorways_in_Breast_Cancer_with_ZeroCostDL4Mic
This is a Google Colab notebook based on ZeroCostDL4Mic for training a Deep Learning model (YOLOv2) and predicting TMEM doorways (blood vessel intravasation sites for tumor cells) in FFPE-fixed tumor tissues.
ThomasCarroll/.github
ThomasCarroll/BioC2019
BioC2019: Where Software and Biology Connect
ThomasCarroll/Bioinformatics-Project
These files will be used in an app designed to display genomics data more efficiently and in a more readable manner.
ThomasCarroll/Cell_Tracking
An ImageJ/Fiji macro for cell tracking in time-lapse movies
ThomasCarroll/CLIPflexR
New repo based on clipr from BRC/RU
ThomasCarroll/conda-deps
Generate conda environment files from Python and R source code
ThomasCarroll/Deep-Learning-and-Scientific-Computing-with-R-torch
Deep Learning and Scientific Computing with R torch
ThomasCarroll/devcontainers-rstudio
Zero-setup R workshops with GitHub Codespaces
ThomasCarroll/Digits_recognition_OpenCV_Python
A Google Colab notebook for recognizing LCD panel digits using OpenCV and Python
ThomasCarroll/docker-plumber-nginx-letsencrypt
Example repository showing how to get plumber, nginx, and Let's Encrypt all working together nicely with Docker Compose
ThomasCarroll/Herper
The Herper package is a simple toolset to install and manage Conda packages and environments from R.
ThomasCarroll/igvShiny
an htmlwidget version of igv, for RStudio and Shiny apps
ThomasCarroll/Intro_To_R_1Day-1
Introduction to R training course
ThomasCarroll/Invadopodia_tracker
Tracking invadopodia (fluorescent micron size dots) in time-lapse movies of cancer cells
ThomasCarroll/libBigWig
A C library for handling bigWig files
ThomasCarroll/morgani-et-al_2018
Data and code for Morgani et al (2018) in Developmental Biology
ThomasCarroll/openai-cookbook
Examples and guides for using the OpenAI API
ThomasCarroll/PASCAL_VOC_xml_generator_ImageJ_Fiji
This macro converts rectangle ROIs saved in ImageJ/Fiji to Pascal VOC xml format.
ThomasCarroll/QENIE
Correlation-based approach for identification of endocrine interactions
ThomasCarroll/ReferenceEnhancer
ThomasCarroll/Rfastp
Wrapper for fastp in R
ThomasCarroll/rhumba
The R package manager that is blazingly fast ⚡. Powered by mamba.
ThomasCarroll/RU_CrisprScreen
ThomasCarroll/saiz-et-al_2020
Data and code for the article by Saiz et al deposited in biorXiv
ThomasCarroll/seamless_communication
Foundational Models for State-of-the-Art Speech and Text Translation
ThomasCarroll/shiny-session-info
A Shiny app showing the types of session information stored in Shiny
ThomasCarroll/TestForKate
ThomasCarroll/Younger_Herre_Vosshall2020
Data and code associated with Mosquito Odor Code (MOC) paper