Pinned Repositories
Varia
Repository for Varia package, containing Varia VIP and Varia GEM
eupathtables
Python interface for reading and converting EuPathDB flat file dumps
eupathws
Data dumper for EuPathDB
ILRA
Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs, correct homopolymer tracks and circulate plastids. We also have the code preinstalled on a virtual linux machine.
IMID-Bio-UK
The script and method repository of the IMIDB-Bio-UK consortium
IPA
Script to improve long read (pacbio) assemblies
QISeq
A bioinformatical pipeline to process Quantitative Insertion-site Sequencing (QIseq) samples
ratt
Rapid Annotation Transfer Tool
t-SNE-UMAP_covid_Example
Some code to plot 4 scRNA-Seq datasets with different methods
varDB
Script how to assemble var genes in Plasmodium falciparum
ThomasDOtto's Repositories
ThomasDOtto/ILRA
Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs, correct homopolymer tracks and circulate plastids. We also have the code preinstalled on a virtual linux machine.
ThomasDOtto/ratt
Rapid Annotation Transfer Tool
ThomasDOtto/varDB
Script how to assemble var genes in Plasmodium falciparum
ThomasDOtto/QISeq
A bioinformatical pipeline to process Quantitative Insertion-site Sequencing (QIseq) samples
ThomasDOtto/IPA
Script to improve long read (pacbio) assemblies
ThomasDOtto/eupathtables
Python interface for reading and converting EuPathDB flat file dumps
ThomasDOtto/eupathws
Data dumper for EuPathDB
ThomasDOtto/IMID-Bio-UK
The script and method repository of the IMIDB-Bio-UK consortium
ThomasDOtto/t-SNE-UMAP_covid_Example
Some code to plot 4 scRNA-Seq datasets with different methods